Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0546
         (417 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0304 - 2502760-2502774,2502844-2502921,2503035-2503103,250...    29   1.5  
06_03_0913 + 25913231-25913609,25913702-25913775,25914400-259145...    29   1.5  
02_01_0624 - 4681834-4682298,4684250-4684398,4684479-4684557,468...    27   4.6  
11_06_0468 - 23953075-23953093,23954046-23955106                       27   6.0  
03_05_0530 - 25306788-25306919,25307446-25308037,25308152-253089...    27   6.0  
01_06_1749 - 39636951-39638102                                         27   8.0  

>08_01_0304 -
           2502760-2502774,2502844-2502921,2503035-2503103,
           2503200-2503289,2503400-2503517,2505548-2505678,
           2505756-2506025,2507175-2507308,2507635-2508088
          Length = 452

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 15/31 (48%), Positives = 16/31 (51%)
 Frame = +2

Query: 17  RCTGVRIPQAGTNFSNEIRTQQMFPIDFHGE 109
           RCTGV I   G N   +I T      DFHGE
Sbjct: 159 RCTGVVIGWDGANKRAKILTAASVVCDFHGE 189


>06_03_0913 +
           25913231-25913609,25913702-25913775,25914400-25914540,
           25914834-25914946,25915359-25915491,25916213-25916351,
           25916428-25916527,25916906-25916963,25917122-25917199,
           25917278-25917376,25917657-25917735,25917826-25917974,
           25918529-25918834,25918994-25919032
          Length = 628

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = +1

Query: 262 WSSRCNYTEILELISRGGWRIYVVDVYGFQ*T 357
           WS+   + ++ EL+ + G ++ V D+YG+Q T
Sbjct: 169 WSAVRGHIQVAELLLKEGAKVDVADLYGYQAT 200


>02_01_0624 -
           4681834-4682298,4684250-4684398,4684479-4684557,
           4684827-4684925,4685004-4685081,4685231-4685288,
           4685814-4685913,4686000-4686008,4686105-4686138,
           4686729-4686911,4687099-4687126,4687268-4687380,
           4688253-4688459,4689212-4689511
          Length = 633

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +1

Query: 262 WSSRCNYTEILELISRGGWRIYVVDVYGFQ*T 357
           WS+   + ++ EL+ + G ++   D+YG+Q T
Sbjct: 140 WSAVRGHIQVAELLLKEGAKVDAADLYGYQTT 171


>11_06_0468 - 23953075-23953093,23954046-23955106
          Length = 359

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = -3

Query: 292 RSQYSYNGYSTLRTETHYCFTAEIGGVVVPTHADSQ 185
           R +Y  NGYS         F   +GGV V  HAD Q
Sbjct: 78  RIRYYPNGYSQSTAGHVSVFVYRVGGVDVGLHADVQ 113


>03_05_0530 -
           25306788-25306919,25307446-25308037,25308152-25308975,
           25309533-25309592,25310115-25310180,25310318-25310461,
           25310616-25310756,25310898-25311056,25311818-25311884,
           25311986-25312158,25312237-25312333,25312410-25312528,
           25312867-25312951,25313120-25313321,25314456-25314633
          Length = 1012

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = -3

Query: 235 FTAEIGGVVVPTHADSQEVLPPVINYANYNFAGLIFITRCYSFTVEVN 92
           FT E  G    THAD+Q    P I + +  + G++++  C+   + ++
Sbjct: 731 FTRE--GDATGTHADAQRQPWPWIQHGHAYWRGVLYVNTCHVMRISLS 776


>01_06_1749 - 39636951-39638102
          Length = 383

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -1

Query: 285 SIVTTATPPFEPKRITA 235
           S+ + A PPF+P RIT+
Sbjct: 165 SVASAAAPPFDPSRITS 181


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,715,967
Number of Sequences: 37544
Number of extensions: 253682
Number of successful extensions: 548
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)