Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0546
         (417 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50367| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.6  
SB_6620| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   4.7  
SB_5722| Best HMM Match : Ion_trans (HMM E-Value=0)                    27   4.7  
SB_48524| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  

>SB_50367| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1498

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +2

Query: 80  QMFPIDFHGEGITSCNKNQTRKIIIGVINH 169
           Q  P+  H  GI + +K  ++KI+IG ++H
Sbjct: 593 QSQPVQSHLVGILTADKAMSQKILIGFVDH 622


>SB_6620| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1375

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +1

Query: 247 FRFEGWSSRCNYTEILELISR 309
           F +E +SSRC Y EI+E+I +
Sbjct: 751 FVYENYSSRCWYWEIVEMIRK 771


>SB_5722| Best HMM Match : Ion_trans (HMM E-Value=0)
          Length = 1236

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 199 HADSQEVLPPVINYANYNFA 140
           H DSQ  L  +++Y NY FA
Sbjct: 550 HLDSQPTLKAILSYMNYTFA 569


>SB_48524| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 167

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = -3

Query: 403 FC--LDGWTSSQSTWC*VFTGTHRHLQRKCATH 311
           FC  LDG++SS  T C VFTG H  L+   A H
Sbjct: 29  FCTHLDGFSSSFKTPCVVFTG-HPSLRYGDAVH 60


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,274,866
Number of Sequences: 59808
Number of extensions: 281533
Number of successful extensions: 468
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 777158991
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)