Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0546
         (417 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z19158-4|CAJ76964.1|  719|Caenorhabditis elegans Hypothetical pr...    27   5.5  
Z35604-7|CAA84682.1|  304|Caenorhabditis elegans Hypothetical pr...    26   9.5  

>Z19158-4|CAJ76964.1|  719|Caenorhabditis elegans Hypothetical
           protein T23G5.2a protein.
          Length = 719

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -1

Query: 369 PGVKCLLEPIDIYNVNAPPT 310
           PGV+CLL+ I+I   N P T
Sbjct: 409 PGVQCLLKIIEIVEANYPET 428


>Z35604-7|CAA84682.1|  304|Caenorhabditis elegans Hypothetical
           protein ZK1058.9 protein.
          Length = 304

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 295 LRSQYSYNGYSTLRTETHYCFTA 227
           + ++  Y+GYS L  ETHY  T+
Sbjct: 228 ITTRRGYSGYSYLANETHYDITS 250


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,506,047
Number of Sequences: 27780
Number of extensions: 211092
Number of successful extensions: 421
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 683806592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)