Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0546
         (417 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    24   0.79 
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    24   0.79 
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   1.4  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    21   4.2  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    21   4.2  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    20   9.7  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 23.8 bits (49), Expect = 0.79
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -2

Query: 413 FFFFLLRWMDELTVHLVLSVYWN 345
           FF FLL W    TV L+  VY N
Sbjct: 288 FFLFLLAWTPYATVALI-GVYGN 309


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 23.8 bits (49), Expect = 0.79
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -2

Query: 413 FFFFLLRWMDELTVHLVLSVYWN 345
           FF FLL W    TV L+  VY N
Sbjct: 288 FFLFLLAWTPYATVALI-GVYGN 309


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2

Query: 122 CNKNQTRKIIIGVI 163
           CNK   RK+I GV+
Sbjct: 203 CNKTAVRKVISGVV 216


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
          protein.
          Length = 69

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +1

Query: 4  HSNVAMHRCSN 36
          HSNV  +RC+N
Sbjct: 39 HSNVYQYRCAN 49


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +2

Query: 104 GEGITSCNKNQTRKIIIGV 160
           G  +  C  N+T K IIGV
Sbjct: 8   GASVLICLLNETAKAIIGV 26


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = -3

Query: 295 LRSQYSYNGYSTLRTETHY 239
           L + Y+YN Y+      HY
Sbjct: 318 LSNNYNYNNYNNNYKPLHY 336


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,275
Number of Sequences: 438
Number of extensions: 2628
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10626762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)