Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0546
         (417 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g04690.1 68416.m00503 protein kinase family protein contains ...    28   2.9  
At1g79780.1 68414.m09310 integral membrane protein, putative con...    27   3.8  
At5g14570.2 68418.m01709 transporter, putative similar to trans-...    27   5.1  
At5g14570.1 68418.m01708 transporter, putative similar to trans-...    27   5.1  
At4g38640.1 68417.m05469 choline transporter-related contains we...    27   5.1  
At5g20350.1 68418.m02421 zinc finger (DHHC type) family protein ...    27   6.7  
At1g56120.1 68414.m06444 leucine-rich repeat family protein / pr...    27   6.7  
At4g28500.1 68417.m04077 no apical meristem (NAM) family protein...    26   8.9  
At1g70320.1 68414.m08090 ubiquitin-protein ligase 2 (UPL2) nearl...    26   8.9  

>At3g04690.1 68416.m00503 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 850

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 16/65 (24%), Positives = 29/65 (44%)
 Frame = -3

Query: 199 HADSQEVLPPVINYANYNFAGLIFITRCYSFTVEVNREHLLSTYFIRKIGTRLRDSNTGA 20
           HA +    P +++   Y  A +      Y   ++ ++ HLL  YF     T L  SN+  
Sbjct: 61  HATATYQDPSLLSTVPYMTARIFTAPATYEIPIKGDKRHLLRLYFYPSTYTGLNISNSYF 120

Query: 19  SLHSN 5
           ++ +N
Sbjct: 121 TVEAN 125


>At1g79780.1 68414.m09310 integral membrane protein, putative
           contains 1 transmembrane domain; contains plant integral
           membrane protein domain, TIGR01569; contains Pfam
           PF04535 : Domain of unknown function (DUF588);  similar
           to putative ethylene responsive element binding protein
           (GI:22135858) [Arabidopsis thaliana]
          Length = 168

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 328 VVDVYGFQ*TLNTRWTVSSS 387
           V D+YGF+ TL++ W+ S S
Sbjct: 50  VADIYGFKLTLSSNWSFSPS 69


>At5g14570.2 68418.m01709 transporter, putative similar to
           trans-membrane nitrate transporter protein AtNRT2:1
           [Arabidopsis thaliana] GI:3747058, high-affinity nitrate
           transporter ACH1 [Arabidopsis thaliana] GI:3608362;
           contains Pfam profile PF00083: Sugar (and other)
           transporter
          Length = 397

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 13/46 (28%), Positives = 26/46 (56%)
 Frame = -3

Query: 154 NYNFAGLIFITRCYSFTVEVNREHLLSTYFIRKIGTRLRDSNTGAS 17
           NY  A ++ +   YS+ VE+  +++++ YF  + G  L  + T A+
Sbjct: 267 NYR-AWILALLYGYSYGVELTTDNVIAGYFYERFGVNLEAAGTIAA 311


>At5g14570.1 68418.m01708 transporter, putative similar to
           trans-membrane nitrate transporter protein AtNRT2:1
           [Arabidopsis thaliana] GI:3747058, high-affinity nitrate
           transporter ACH1 [Arabidopsis thaliana] GI:3608362;
           contains Pfam profile PF00083: Sugar (and other)
           transporter
          Length = 493

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 13/46 (28%), Positives = 26/46 (56%)
 Frame = -3

Query: 154 NYNFAGLIFITRCYSFTVEVNREHLLSTYFIRKIGTRLRDSNTGAS 17
           NY  A ++ +   YS+ VE+  +++++ YF  + G  L  + T A+
Sbjct: 267 NYR-AWILALLYGYSYGVELTTDNVIAGYFYERFGVNLEAAGTIAA 311


>At4g38640.1 68417.m05469 choline transporter-related contains weak
           similarity to CD92 protein [Homo sapiens]
           gi|16945323|emb|CAC82175
          Length = 556

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = -3

Query: 166 INYANYNFAGLIFITRCYS--FTVEVNREHLLSTYFIRKIGTRL 41
           +N    NFA +     C S   T E+ R +LLS  F+  + TR+
Sbjct: 412 LNKFTINFAAITGEAYCTSAKMTYELLRRNLLSAVFVETVSTRI 455


>At5g20350.1 68418.m02421 zinc finger (DHHC type) family protein /
           ankyrin repeat family protein similar to patsas protein
           [Drosophila melanogaster] GI:6002770; contains Pfam
           profiles PF00023: Ankyrin repeat, PF01529: DHHC zinc
           finger domain
          Length = 592

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 262 WSSRCNYTEILELISRGGWRIYVVDVYGFQ*T 357
           WS+     ++ EL+ + G R+   D+YG+Q T
Sbjct: 104 WSAVRGAIQVAELLLQEGARVDATDMYGYQAT 135


>At1g56120.1 68414.m06444 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 1045

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 77  QQMFPIDFHGEGITSCNKNQTRKIIIGVIN 166
           Q+ FP +  GEGI  CNK    +I+  ++N
Sbjct: 385 QKNFPCN-RGEGICKCNKKIPSQIMFSMLN 413


>At4g28500.1 68417.m04077 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) domain;
          Length = 305

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = -1

Query: 126 LQDVIPSPWKSIGNIC*VRISLEKLVPACGIRTPVHRYIRMH 1
           ++ +IPSP  +   +  + +S  K  P+CG     H    +H
Sbjct: 13  VERIIPSPGAAESPVASLPVSCHKTCPSCGHNFKFHEQAGIH 54


>At1g70320.1 68414.m08090 ubiquitin-protein ligase 2 (UPL2) nearly
            identical to ubiquitin-protein ligase 2 [Arabidopsis
            thaliana] GI:7108523; E3, HECT-domain protein family;
            similar to ubiquitin-protein ligase 2 GI:7108523 from
            [Arabidopsis thaliana]
          Length = 3658

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +3

Query: 39   RRRVPIFLMKYVLNKCSRLTST 104
            ++RVP  +M+ VL  C+RLT +
Sbjct: 1564 KQRVPAMIMQAVLQLCARLTKS 1585


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,890,875
Number of Sequences: 28952
Number of extensions: 198045
Number of successful extensions: 396
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 396
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 635399168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)