Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0545
         (770 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    35   0.015
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch...    29   0.97 
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    27   2.2  
SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protei...    27   3.0  
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    26   5.2  
SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA synthase|Sc...    25   9.1  
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    25   9.1  

>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1727

 Score = 34.7 bits (76), Expect = 0.015
 Identities = 20/93 (21%), Positives = 46/93 (49%)
 Frame = +1

Query: 418 LSTTKPTPLIQSRKAEAMQNVHKEINDHFAHLKKQYKIKTSKFTPVQQALIASLNSTITE 597
           L+T++ + L  +  A  + +  K I++    L+K Y++  ++ T +Q++L       ++E
Sbjct: 617 LATSRSSILSHNSSAGNIDDKMKSIDESTRELEKNYEVYRNEMTAIQESLSKRNQDLLSE 676

Query: 598 LENIWNTVDNWVDNESLFPDKNGDPGRILHAIK 696
           +E I   ++N    + L  D+  +    + A K
Sbjct: 677 MEAIRKELENSKYQQQLSTDRLTNANNDVEAFK 709



 Score = 27.5 bits (58), Expect = 2.2
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
 Frame = +1

Query: 472  QNVHKEINDHFAHLKKQYKIKTSKFTPVQ------QALIASLNSTITELENIWNTVDNWV 633
            +N+ +E+N    HLK + +   SK   ++      Q+ I  L    T+L   W T    V
Sbjct: 1330 ENLIEELNQEIGHLKSELETVKSKSEDLENERAQNQSKIEQLELKNTKLAAAWRTKYEQV 1389

Query: 634  DNESL 648
             N+SL
Sbjct: 1390 VNKSL 1394


>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
           Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1108

 Score = 28.7 bits (61), Expect = 0.97
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +1

Query: 523 YKIKTSKFTPVQQALIASLNSTITELENIWNT 618
           Y +K    T   ++ +  LNST+ E++N+WN+
Sbjct: 635 YVVKRHNCTVRVESPVNELNSTMEEVKNVWNS 666


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 21/68 (30%), Positives = 27/68 (39%)
 Frame = +1

Query: 454 RKAEAMQNVHKEINDHFAHLKKQYKIKTSKFTPVQQALIASLNSTITELENIWNTVDNWV 633
           RK +  +  HK  N          K K     P + A  A +     ELEN    V+N V
Sbjct: 352 RKVDKSEMTHKNPNLRKTGPTPGPKPKIKSSAPSKPAETAPVKPPRIELENTKWFVENQV 411

Query: 634 DNESLFPD 657
           DN S+  D
Sbjct: 412 DNHSIVLD 419


>SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protein
           Mcp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 327

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 15/54 (27%), Positives = 29/54 (53%)
 Frame = +1

Query: 484 KEINDHFAHLKKQYKIKTSKFTPVQQALIASLNSTITELENIWNTVDNWVDNES 645
           +++ +  AHLKK+  +  SKF         SL S+ T+L++   T+   ++ E+
Sbjct: 129 RKLEEEMAHLKKKCNVYKSKFEE-SSLRCKSLYSSNTKLKDSMETMKRRMETET 181


>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
           Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 599 NSVMVELSDAIRACCTGVNLDVLILYCF 516
           +S +V+   A+R  C+GVN   LI + F
Sbjct: 819 SSTVVDCVSAVREACSGVNCHDLIYHVF 846


>SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA
           synthase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 447

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 644 DSLSTQLSTVFQIFSNSVMVELSDAIRACCTGVN 543
           D   +  S + Q+F ++  VE  D + AC  GVN
Sbjct: 90  DKSKSVKSVLMQLFGDNHNVEGIDCVNACYGGVN 123


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1428

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
 Frame = -1

Query: 629  QLSTVFQIFSNSVMVELSDAIRACCTGVNLD-VLILYCFFKC--AK*SLISLWTFCIASA 459
            +L  V  +  N  + +L   +       NL  +L+L CF+KC  A  S++++ T  I S 
Sbjct: 1090 KLHQVGALSENEKLTKLGKFLSQLPVDANLGKILVLGCFYKCVDAASSIVAMLT--IGSP 1147

Query: 458  FR 453
            FR
Sbjct: 1148 FR 1149


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,876,205
Number of Sequences: 5004
Number of extensions: 54138
Number of successful extensions: 174
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)