Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0545
         (770 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1195 + 10280864-10280979,10281024-10281115,10281211-102821...    30   2.4  
08_02_1332 + 26207164-26207257,26207454-26207530,26207771-262078...    29   3.1  
08_01_0420 + 3726392-3727116,3727450-3727648,3727787-3727879,372...    29   3.1  
04_04_0501 - 25681880-25683721,25683809-25684075,25685347-25685964     29   3.1  
10_02_0105 - 5345149-5347833                                           29   5.4  
04_01_0603 - 7931162-7931446,7932217-7932718,7932824-7934925           29   5.4  
12_01_0425 + 3347804-3348284,3348544-3348759,3349038-3349588,334...    28   7.2  
08_01_0181 + 1530623-1531626,1531723-1531902,1531998-1532177,153...    28   9.5  

>06_01_1195 +
           10280864-10280979,10281024-10281115,10281211-10282156,
           10282378-10283075,10283140-10284068
          Length = 926

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
 Frame = +1

Query: 493 NDHFAHLKKQYKIKTSKFTPVQQALIASLNST--ITELENIWNTVD--NWVDNESLFPDK 660
           N+HF  L+   +    K   + + L   L        L+++W+ +D  NW+ NES+FPD 
Sbjct: 271 NEHFKGLQSMQR--NEKVEDLVEDLKQGLKEKRYFVVLDDMWS-IDALNWL-NESVFPDS 326

Query: 661 NGDPGRILHAIKSSPI 708
           N    RI+   + + I
Sbjct: 327 NNGGSRIIVTTRDASI 342


>08_02_1332 +
           26207164-26207257,26207454-26207530,26207771-26207841,
           26208448-26208502,26209066-26209187,26209272-26209353,
           26210070-26210160,26210759-26210982,26211294-26211413,
           26211523-26211705
          Length = 372

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 20/69 (28%), Positives = 32/69 (46%)
 Frame = +1

Query: 397 NIYFFYNLSTTKPTPLIQSRKAEAMQNVHKEINDHFAHLKKQYKIKTSKFTPVQQALIAS 576
           ++YF  +L TT  T L    K        +++ D   +LKK YK  T+K T   Q L+  
Sbjct: 229 HLYFSCDLETTFLTFLAPQIKPVEPAVSPEQLRDCLRNLKKNYKDDTTKVTRAFQILLKI 288

Query: 577 LNSTITELE 603
           + + +   E
Sbjct: 289 IANIVKNPE 297


>08_01_0420 +
           3726392-3727116,3727450-3727648,3727787-3727879,
           3728001-3728129,3728445-3728498,3728597-3728674,
           3728773-3728835,3729101-3729213,3729392-3729500
          Length = 520

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = +1

Query: 520 QYKIKTSKFTPVQQALIASLNSTITELENIWNTVDNWVD-NESLFPDKNGDPGRILHA 690
           +Y+++     P  + +  SLN +  ++ N    V+  +  ++  FP  NG PG  LH+
Sbjct: 369 KYELEDQGIAPTIENIAGSLNISEKKVLNATEAVNKVLSLDQQAFPSLNGLPGETLHS 426


>04_04_0501 - 25681880-25683721,25683809-25684075,25685347-25685964
          Length = 908

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = -1

Query: 311 MKYIQIKHVKHKHKLYINNCYRLNSTITNS 222
           +K     H+KH  +L++ +CY LN+ + ++
Sbjct: 665 IKISDFNHMKHLEELHVESCYDLNTLVADT 694


>10_02_0105 - 5345149-5347833
          Length = 894

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = +1

Query: 598 LENIWNTVDNWVDNESLFPDKNGDPGRIL 684
           L++IW T D W   +S+FPDK G+  RI+
Sbjct: 281 LDDIWTT-DTWDKIKSVFPDK-GNGSRII 307


>04_01_0603 - 7931162-7931446,7932217-7932718,7932824-7934925
          Length = 962

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/51 (23%), Positives = 24/51 (47%)
 Frame = +1

Query: 517 KQYKIKTSKFTPVQQALIASLNSTITELENIWNTVDNWVDNESLFPDKNGD 669
           K+Y +K S +  V   ++A +     E++ +    D W+    L  +K+ D
Sbjct: 107 KKYVVKGSHYAIVFDGIVAEIVQIEQEIQRVIKLKDKWLQPSQLIRNKHSD 157


>12_01_0425 +
           3347804-3348284,3348544-3348759,3349038-3349588,
           3349752-3349815,3349915-3349975,3350271-3350409,
           3350561-3350677,3350794-3350971,3351218-3351828
          Length = 805

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
 Frame = -1

Query: 764 SKISNSFNCVP---FGALSTSAIGEDFIA*SILPGSPFLSGNRDSLSTQLSTVFQIFSNS 594
           + +SN F   P   FG+ ST+     F   S    SPF S     L TQ S+   +F+NS
Sbjct: 272 TSVSNPFAAKPSTGFGSTSTTLFNSPFNNTSAASSSPFASTTSIPLFTQTSS--SLFANS 329


>08_01_0181 +
           1530623-1531626,1531723-1531902,1531998-1532177,
           1532363-1532442,1532528-1532701,1533001-1533118,
           1533223-1533301
          Length = 604

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 22/54 (40%), Positives = 26/54 (48%)
 Frame = +2

Query: 350 ITCLEYRSFCFV*SYSIFTSSTILVRPNLHL*FNHGKQKLCKMSIKKLMIISHT 511
           I C E R F FV   S  T STIL+R N H  F  G + L K   +K   +  T
Sbjct: 405 IPCQERRMFGFVSFQSPETVSTILMRRNPH--FICGSRVLVKPYREKSKCVDRT 456


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,638,386
Number of Sequences: 37544
Number of extensions: 282809
Number of successful extensions: 680
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)