Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0545
         (770 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22404| Best HMM Match : SNF2_N (HMM E-Value=0)                      33   0.25 
SB_56370| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.45 
SB_24336| Best HMM Match : PqiA (HMM E-Value=1.5)                      29   5.5  
SB_37663| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_31876| Best HMM Match : RVT_1 (HMM E-Value=0)                       28   9.6  
SB_54068| Best HMM Match : RVT_1 (HMM E-Value=0.92)                    28   9.6  
SB_38806| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.6  
SB_19795| Best HMM Match : RVT_1 (HMM E-Value=1.3)                     28   9.6  
SB_14872| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.6  
SB_10718| Best HMM Match : RVT_1 (HMM E-Value=2.3e-33)                 28   9.6  
SB_9873| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.6  
SB_8967| Best HMM Match : RVT_1 (HMM E-Value=7.6e-18)                  28   9.6  

>SB_22404| Best HMM Match : SNF2_N (HMM E-Value=0)
          Length = 1918

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 23/88 (26%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
 Frame = +1

Query: 454 RKAEAMQNVHKEINDHFAHLKK--QYKIKTSKFTPVQQALIASLNSTITELENIWNTVDN 627
           R  +   ++ KE+   +A+++K  QYK+++      ++AL   LN  + + E       +
Sbjct: 448 RLKKIASSIAKEVKQFWANVEKVVQYKVQSRLEEKRKKALDDQLNFIVDQTEKY----SS 503

Query: 628 WVDNESLFPDKNGDPGRILHAIKSSPIA 711
           W+  ESL P  +  PG ++    +SPI+
Sbjct: 504 WLV-ESLKPQPSSAPGSVVSTAPTSPIS 530


>SB_56370| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 548

 Score = 32.3 bits (70), Expect = 0.45
 Identities = 19/57 (33%), Positives = 26/57 (45%)
 Frame = +1

Query: 595 ELENIWNTVDNWVDNESLFPDKNGDPGRILHAIKSSPIALVDNAPKGTQLKLLLILE 765
           E ++ W    + V +  L P    +   IL A+   PI       KGTQLK  L+LE
Sbjct: 120 EGDDPWQLWKDMVTSRHLTPSGKQEVNLILDALSYKPIVAAGVGYKGTQLKATLLLE 176


>SB_24336| Best HMM Match : PqiA (HMM E-Value=1.5)
          Length = 260

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/62 (20%), Positives = 30/62 (48%)
 Frame = +1

Query: 346 MNYMFGISVFLLCLVLLNIYFFYNLSTTKPTPLIQSRKAEAMQNVHKEINDHFAHLKKQY 525
           +N     S+F +  ++       + S+T P+  + S  + ++Q++H+    H  H + QY
Sbjct: 18  INITISFSIFSVISIITASSSASSTSSTSPSASVYSVSSASLQHLHQRHRHHQHHHQLQY 77

Query: 526 KI 531
            +
Sbjct: 78  SV 79


>SB_37663| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1735

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 10/29 (34%), Positives = 21/29 (72%)
 Frame = -1

Query: 308  KYIQIKHVKHKHKLYINNCYRLNSTITNS 222
            +YI+ +++K++H LY    YR++S + +S
Sbjct: 1679 RYIEYRYIKYRHILYRYIKYRISSIVISS 1707


>SB_31876| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 630

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -1

Query: 617 VFQIFSNSVMVELSDAIRACCTGVNLDVLILYCFFKCAK 501
           +F I+ NS    L D + +CC  +  D  ++YC+   +K
Sbjct: 418 LFVIYINS----LPDVLESCCASLYADDTVIYCYGSSSK 452


>SB_54068| Best HMM Match : RVT_1 (HMM E-Value=0.92)
          Length = 208

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -1

Query: 617 VFQIFSNSVMVELSDAIRACCTGVNLDVLILYCFFKCAK 501
           +F I+ NS    L D + +CC  +  D  ++YC+   +K
Sbjct: 80  LFVIYINS----LPDVLESCCASLYADDTVIYCYGSSSK 114


>SB_38806| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 430

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -1

Query: 617 VFQIFSNSVMVELSDAIRACCTGVNLDVLILYCFFKCAK 501
           +F I+ NS    L D + +CC  +  D  ++YC+   +K
Sbjct: 252 LFVIYINS----LPDVLESCCASLYADDTVIYCYGSSSK 286


>SB_19795| Best HMM Match : RVT_1 (HMM E-Value=1.3)
          Length = 171

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -1

Query: 617 VFQIFSNSVMVELSDAIRACCTGVNLDVLILYCFFKCAK 501
           +F I+ NS    L D + +CC  +  D  ++YC+   +K
Sbjct: 80  LFVIYINS----LPDVLESCCASLYADDTVIYCYGSSSK 114


>SB_14872| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1182

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -1

Query: 617 VFQIFSNSVMVELSDAIRACCTGVNLDVLILYCFFKCAK 501
           +F I+ NS    L D + +CC  +  D  ++YC+   +K
Sbjct: 550 LFVIYINS----LPDVLESCCASLYADDTVIYCYGSSSK 584


>SB_10718| Best HMM Match : RVT_1 (HMM E-Value=2.3e-33)
          Length = 365

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -1

Query: 617 VFQIFSNSVMVELSDAIRACCTGVNLDVLILYCFFKCAK 501
           +F I+ NS    L D + +CC  +  D  ++YC+   +K
Sbjct: 300 LFVIYINS----LPDVLESCCASLYADDTVIYCYGSSSK 334


>SB_9873| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 120

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -1

Query: 617 VFQIFSNSVMVELSDAIRACCTGVNLDVLILYCFFKCAK 501
           +F I+ NS    L D + +CC  +  D  ++YC+   +K
Sbjct: 29  LFVIYINS----LPDVLESCCASLYADDTVIYCYGSSSK 63


>SB_8967| Best HMM Match : RVT_1 (HMM E-Value=7.6e-18)
          Length = 483

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -1

Query: 617 VFQIFSNSVMVELSDAIRACCTGVNLDVLILYCFFKCAK 501
           +F I+ NS    L D + +CC  +  D  ++YC+   +K
Sbjct: 388 LFVIYINS----LPDVLESCCASLYADDTVIYCYGSSSK 422


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,323,109
Number of Sequences: 59808
Number of extensions: 360963
Number of successful extensions: 1059
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1056
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)