Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0545
         (770 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81118-6|CAI46578.1| 1203|Caenorhabditis elegans Hypothetical pr...    34   0.13 
Z81118-5|CAB03330.2| 1205|Caenorhabditis elegans Hypothetical pr...    34   0.13 
AY032860-1|AAK52089.1| 1205|Caenorhabditis elegans EEA1 protein.       34   0.13 
U80454-6|AAB37879.1|  786|Caenorhabditis elegans Hypothetical pr...    33   0.23 
AC024809-5|AAF59544.3|  287|Caenorhabditis elegans Hypothetical ...    32   0.39 
Z75552-2|CAA99944.1|  894|Caenorhabditis elegans Hypothetical pr...    31   0.91 
Z75552-1|CAA99941.1|  920|Caenorhabditis elegans Hypothetical pr...    31   0.91 
AC024880-2|AAF60914.4|  665|Caenorhabditis elegans Hypothetical ...    30   2.1  
AC024880-1|AAR12985.1|  634|Caenorhabditis elegans Hypothetical ...    30   2.1  
AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical ...    29   2.8  
AF003385-4|AAB54244.1|  333|Caenorhabditis elegans Hypothetical ...    29   4.8  
U28928-9|AAN63431.1|  471|Caenorhabditis elegans Hypothetical pr...    28   8.5  

>Z81118-6|CAI46578.1| 1203|Caenorhabditis elegans Hypothetical protein
            T10G3.5b protein.
          Length = 1203

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
 Frame = +1

Query: 448  QSRKAEAMQNVHKEINDHFAHLKKQYKIKT---SKFTPVQQALIASLNSTITELENIWNT 618
            QS+K E ++ + KEI +    + +    KT   + F  VQQ L   +N    E+E +   
Sbjct: 957  QSQKQEELEKLQKEIQEKETTIARMTSSKTQFEAMFADVQQTLSKEINDKTEEIERLMER 1016

Query: 619  VDN 627
            +D+
Sbjct: 1017 IDS 1019


>Z81118-5|CAB03330.2| 1205|Caenorhabditis elegans Hypothetical protein
            T10G3.5a protein.
          Length = 1205

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
 Frame = +1

Query: 448  QSRKAEAMQNVHKEINDHFAHLKKQYKIKT---SKFTPVQQALIASLNSTITELENIWNT 618
            QS+K E ++ + KEI +    + +    KT   + F  VQQ L   +N    E+E +   
Sbjct: 959  QSQKQEELEKLQKEIQEKETTIARMTSSKTQFEAMFADVQQTLSKEINDKTEEIERLMER 1018

Query: 619  VDN 627
            +D+
Sbjct: 1019 IDS 1021


>AY032860-1|AAK52089.1| 1205|Caenorhabditis elegans EEA1 protein.
          Length = 1205

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
 Frame = +1

Query: 448  QSRKAEAMQNVHKEINDHFAHLKKQYKIKT---SKFTPVQQALIASLNSTITELENIWNT 618
            QS+K E ++ + KEI +    + +    KT   + F  VQQ L   +N    E+E +   
Sbjct: 959  QSQKQEELEKLQKEIQEKETTIARMTSSKTQFEAMFADVQQTLSKEINDKTEEIERLMER 1018

Query: 619  VDN 627
            +D+
Sbjct: 1019 IDS 1021


>U80454-6|AAB37879.1|  786|Caenorhabditis elegans Hypothetical
           protein T16A1.2 protein.
          Length = 786

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = +1

Query: 529 IKTSKFTPVQQALIASLNSTITELENIWNTVDNWVD 636
           +K++K+TP+ ++L  +   T+ E+   +  VD W D
Sbjct: 596 LKSNKYTPLLKSLFGNFRHTVLEIATFFYKVDTWAD 631


>AC024809-5|AAF59544.3|  287|Caenorhabditis elegans Hypothetical
           protein Y53G8AR.5 protein.
          Length = 287

 Score = 32.3 bits (70), Expect = 0.39
 Identities = 18/66 (27%), Positives = 33/66 (50%)
 Frame = +1

Query: 463 EAMQNVHKEINDHFAHLKKQYKIKTSKFTPVQQALIASLNSTITELENIWNTVDNWVDNE 642
           E +  + +EI D   H+K+Q  ++T+ F PV +A +   N+     EN+   + N   N+
Sbjct: 151 ECLTGLRQEIQDAQKHMKEQ--VETNIFCPVCRAQLTDSNTIHNYRENVQLMIKNCKKNQ 208

Query: 643 SLFPDK 660
               +K
Sbjct: 209 KTLKNK 214


>Z75552-2|CAA99944.1|  894|Caenorhabditis elegans Hypothetical
           protein W04D2.1b protein.
          Length = 894

 Score = 31.1 bits (67), Expect = 0.91
 Identities = 12/48 (25%), Positives = 25/48 (52%)
 Frame = +1

Query: 463 EAMQNVHKEINDHFAHLKKQYKIKTSKFTPVQQALIASLNSTITELEN 606
           + ++ VH+E+ ++F    ++ +          + L+ S+N TI E EN
Sbjct: 692 DELERVHQEMQENFVFENRKSRYSMESLRVGWETLLTSINKTINEFEN 739


>Z75552-1|CAA99941.1|  920|Caenorhabditis elegans Hypothetical
           protein W04D2.1a protein.
          Length = 920

 Score = 31.1 bits (67), Expect = 0.91
 Identities = 12/48 (25%), Positives = 25/48 (52%)
 Frame = +1

Query: 463 EAMQNVHKEINDHFAHLKKQYKIKTSKFTPVQQALIASLNSTITELEN 606
           + ++ VH+E+ ++F    ++ +          + L+ S+N TI E EN
Sbjct: 718 DELERVHQEMQENFVFENRKSRYSMESLRVGWETLLTSINKTINEFEN 765


>AC024880-2|AAF60914.4|  665|Caenorhabditis elegans Hypothetical
           protein Y97E10AR.2a protein.
          Length = 665

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +1

Query: 367 SVFLLCLVLLNIYFFYNLSTTKPTPLIQSRKAEAMQNVHKEINDH 501
           SVF++  +LL I  FY + TT+   L Q +  E      KE+  H
Sbjct: 27  SVFVVLFLLLTILLFYFIFTTRDVYLSQKQALEEEDIKKKEVAAH 71


>AC024880-1|AAR12985.1|  634|Caenorhabditis elegans Hypothetical
           protein Y97E10AR.2b protein.
          Length = 634

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +1

Query: 367 SVFLLCLVLLNIYFFYNLSTTKPTPLIQSRKAEAMQNVHKEINDH 501
           SVF++  +LL I  FY + TT+   L Q +  E      KE+  H
Sbjct: 27  SVFVVLFLLLTILLFYFIFTTRDVYLSQKQALEEEDIKKKEVAAH 71


>AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical
           protein Y63D3A.5 protein.
          Length = 486

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
 Frame = +1

Query: 397 NIYFFYNLSTTKPTPLIQSRKAEA----MQNVHKEINDHFAHLKKQYKIKTSKFTPVQQA 564
           NI F  +     P+P + S KAE       +VH++ N   AH++++  ++     P  Q 
Sbjct: 148 NIVFQKSFEAAPPSP-VPSEKAELPATIQPSVHEQFNHRPAHVEEEIPLENHYAPPPHQQ 206

Query: 565 LIASLNSTIT 594
           +   LN++ +
Sbjct: 207 IPDDLNTSFS 216


>AF003385-4|AAB54244.1|  333|Caenorhabditis elegans Hypothetical
           protein R08F11.2 protein.
          Length = 333

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +2

Query: 299 EYISLVKHAINIALCR*ITCLEYRSFCFV 385
           EY + + H +N  L   +TCL Y SFCFV
Sbjct: 195 EYAN-IPHGVNNFLVVGLTCLLYVSFCFV 222


>U28928-9|AAN63431.1|  471|Caenorhabditis elegans Hypothetical
           protein C44B7.10 protein.
          Length = 471

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 406 FFYNLSTTKPTPLIQSRKAEAMQNVHKEINDHFAHLK 516
           F + ++ T PTPL+QS    A+ N   +I  H  HL+
Sbjct: 57  FVHGIAAT-PTPLLQSLSEHAVANNLNKIKLHHLHLE 92


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,705,989
Number of Sequences: 27780
Number of extensions: 297048
Number of successful extensions: 902
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 902
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)