Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0545
         (770 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g63050.1 68418.m07910 expressed protein                             30   1.5  
At5g20430.1 68418.m02429 mob1/phocein family protein contains Pf...    30   1.9  
At5g49950.1 68418.m06185 embryogenesis-associated protein-relate...    29   3.4  
At5g06350.1 68418.m00711 expressed protein                             29   3.4  
At5g27010.1 68418.m03222 hypothetical protein                          29   4.5  
At5g24280.1 68418.m02856 expressed protein ; expression supporte...    28   7.9  
At2g19950.1 68415.m02332 expressed protein contains 2 transmembr...    28   7.9  
At1g70610.1 68414.m08135 ABC transporter (TAP1) contains Pfam pr...    28   7.9  

>At5g63050.1 68418.m07910 expressed protein
          Length = 345

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = +1

Query: 424 TTKPTPLIQSRKAEAMQNVHKEINDHFAHLKKQYKIKTSKFTPVQQALIASLNSTIT-EL 600
           TTK     + RKAE++Q+    +   F  L    KI    F P   A+ A   + +T EL
Sbjct: 168 TTKQETETEIRKAESLQSTKNTVWSWFWSLDAAIKIPLLLFVPAFLAVYAICGAEVTKEL 227

Query: 601 ENIW 612
             +W
Sbjct: 228 SPMW 231


>At5g20430.1 68418.m02429 mob1/phocein family protein contains Pfam
           profile: PF03637 mob1/phocein family
          Length = 122

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +1

Query: 598 LENIWNTVDNWVDNESLFPDKNGDP 672
           +E + N ++  +DNE +FP K G+P
Sbjct: 23  VELLMNWIETQIDNEHIFPKKTGEP 47


>At5g49950.1 68418.m06185 embryogenesis-associated protein-related
           contains weak similarity to Embryogenesis-associated
           protein EMB8 (Swiss-Prot:Q40863) [Picea glauca]
          Length = 537

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -2

Query: 742 IVSPLVHYLLVLSVKILLHEVFFQDLHFYQETEIH--YQPN 626
           ++ P+ HYL+   + ILL   FF ++HF +   I   + PN
Sbjct: 22  LLIPISHYLIFFFLTILLFLYFFLEIHFPKADPISLTFNPN 62


>At5g06350.1 68418.m00711 expressed protein
          Length = 890

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = -1

Query: 677 LPGSPFLSGNRDSLSTQLSTVFQIFSNSVMVELSDAIRACCTGVNLDVLILY 522
           +PG PF S  R++    L  ++   ++     +  AI +CC    L+  +LY
Sbjct: 569 VPGGPFASLPREAQELALCFLYYFTTDKFSSPMMKAIVSCCLYPQLEPAVLY 620


>At5g27010.1 68418.m03222 hypothetical protein
          Length = 863

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = -1

Query: 677 LPGSPFLSGNRDSLSTQLSTVFQIFSNSVMVELSDAIRACCTGVNLDVLILY 522
           +PG PF+S  R+     L  ++    ++    +  AI +CC    L+  +LY
Sbjct: 542 VPGGPFVSLPREVQEVALCFLYYFIIDNFSSPMLKAIVSCCLYEQLEPAVLY 593


>At5g24280.1 68418.m02856 expressed protein ; expression supported
           by MPSS
          Length = 1634

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/76 (22%), Positives = 37/76 (48%)
 Frame = +1

Query: 376 LLCLVLLNIYFFYNLSTTKPTPLIQSRKAEAMQNVHKEINDHFAHLKKQYKIKTSKFTPV 555
           L+C+VLL +  F    T   +   +S+K   +Q   + + D+ + + K +K       P 
Sbjct: 261 LICIVLLRLTLFSVRRTLVSSKTKESKKVFTLQFKKEALIDNRSIVGKNWKTDGGMRDPS 320

Query: 556 QQALIASLNSTITELE 603
           ++ +  S + + T++E
Sbjct: 321 EEEMKLSPHGSFTKVE 336


>At2g19950.1 68415.m02332 expressed protein contains 2 transmembrane
           domains; weak similarity to HPSR2 - heavy chain
           potential motor protein (GI:871048) [Giardia
           intestinalis]
          Length = 702

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/53 (24%), Positives = 27/53 (50%)
 Frame = +1

Query: 466 AMQNVHKEINDHFAHLKKQYKIKTSKFTPVQQALIASLNSTITELENIWNTVD 624
           A Q + K       HL+K      S+ T V+ +++ +L +  +E+E + + +D
Sbjct: 312 AEQELTKSYEASIRHLQKDLSAAKSEVTKVESSMVEALAAKNSEIETLVSAMD 364


>At1g70610.1 68414.m08135 ABC transporter (TAP1) contains Pfam
           profile: PF00005 ABC transporters; similar to TAP1
           protein (transporter of processed antigen) GB:AAD53033
           (Oncorhynchus mykiss); identical to cDNA transporter
           associated with antigen processing-like protein (TAP1)
           GI:19335721
          Length = 700

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/44 (25%), Positives = 22/44 (50%)
 Frame = +1

Query: 337 IMSMNYMFGISVFLLCLVLLNIYFFYNLSTTKPTPLIQSRKAEA 468
           ++ +++  G+   ++C +L  + F Y +   K   LIQ   A A
Sbjct: 271 LLILSWPLGLCTLVICCILAAVMFVYGMYQKKTAKLIQEITASA 314


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,229,567
Number of Sequences: 28952
Number of extensions: 254222
Number of successful extensions: 613
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1716774400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)