Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0544
         (559 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha...    29   0.46 
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|...    28   0.81 
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    26   3.3  
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    26   3.3  
SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces...    25   5.7  
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo...    25   5.7  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    25   10.0 

>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
           Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 697

 Score = 29.1 bits (62), Expect = 0.46
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +2

Query: 311 MDNVPDFHYHTKQTRSNAVRQNFPETNVRTP 403
           MD++ DF+++ K T SN  + N+   N RTP
Sbjct: 1   MDDLLDFNFYDKSTPSN--QNNYSNNNSRTP 29


>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 28.3 bits (60), Expect = 0.81
 Identities = 21/85 (24%), Positives = 34/85 (40%)
 Frame = +1

Query: 286 KLIAPIAAHGQRARLSLPHQTDAIQCSQTKLSGDQRAHARRCSKRTAAKPPFT*SHENLE 465
           +++A      Q + L+L   + A   S T    D R+ A   S+  +  P      +  E
Sbjct: 83  RMLAEALGLPQPSALALT-SSKAANRSSTNTEKDSRSIAHSTSRSRSTSPANRHRRKEKE 141

Query: 466 SSMSGHTLGRRRLSFVYRRHISTRY 540
            + S H  G  R    YR H+S  +
Sbjct: 142 RTRSNHRHGSHRRHEPYRTHLSRHH 166


>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 681

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 7/74 (9%)
 Frame = +2

Query: 44  LYPNQASFVADNTRLLTSTPC----GFTNVLSAPSVRNLGNNRYQPG---YQLSNNRFVS 202
           L  N  SF   ++   T  P     G  N LS+PS     ++ Y PG   YQ SN++  S
Sbjct: 107 LLSNTPSFTTSHSSSTTFVPPATMGGGLNNLSSPS-----SSLYLPGSASYQRSNSKNSS 161

Query: 203 TSYINRITRNNDIP 244
            S +   T  +DIP
Sbjct: 162 ASILQMNTTLDDIP 175


>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 673

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = +2

Query: 98  TPCGFTNVLSAPSVRNLGNNRYQPG---YQLSNNRFVSTSY 211
           TP   +N  SAP  R+ G N Y  G   + +  +R+V+ +Y
Sbjct: 134 TPRTNSNAFSAPPRRSRGYNTYGQGSGHHPMDKSRYVNANY 174


>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1009

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +2

Query: 35  VNKLYPNQASFVADNTRLLTSTPCGF 112
           +N L PNQASFV  N+ L      GF
Sbjct: 695 LNHLSPNQASFVIRNSSLSEYGVLGF 720


>SPBC31F10.10c |||zf-MYND type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = +2

Query: 176 QLSNNRFVSTSYINRITRNNDIPNIRNVFQGISDPQINSLRQLRRMDNVPDFH 334
           QLS N   S +  NR  RN  +P +         P  ++L   RR +NV D+H
Sbjct: 331 QLSLNNVQSQALNNRQRRNQLLPGV---------PSTSALLDGRRPENVVDYH 374


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2052

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
 Frame = -3

Query: 182  IIDSPADICCFQG---CVHWAR*AHL*NRRECLLKDAYYQQQN 63
            ++D P  +C       C  W R     N R  LL DA+Y+Q N
Sbjct: 894  LLDHPLRVCVLLAQIDCNLWIR-----NGRSILLTDAFYRQLN 931


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,341,239
Number of Sequences: 5004
Number of extensions: 49658
Number of successful extensions: 128
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)