Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0544
(559 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_03_0031 + 7214010-7215450,7215534-7216913,7217007-7217386 32 0.27
01_06_1263 + 35840502-35841308,35841763-35841969,35842272-358423... 30 1.1
04_01_0260 - 3506672-3508981 29 3.3
03_02_1027 + 13422698-13422914,13424899-13424959,13425366-134254... 29 3.3
07_03_1027 - 23371826-23372006,23372110-23372171,23372595-233743... 28 4.4
04_04_0500 - 25677767-25680850 28 4.4
06_03_0077 + 16284106-16284128,16284552-16284795,16285490-162855... 28 5.8
03_06_0774 + 36171177-36173099 28 5.8
02_05_1312 + 35642687-35642923,35643712-35643831,35644468-356445... 28 5.8
04_01_0505 + 6599181-6599249,6599537-6599632,6599931-6599962,660... 27 7.7
01_06_0958 - 33357689-33357997,33358135-33358284,33358371-333585... 27 7.7
>10_03_0031 + 7214010-7215450,7215534-7216913,7217007-7217386
Length = 1066
Score = 32.3 bits (70), Expect = 0.27
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 4/92 (4%)
Frame = +2
Query: 53 NQASFVADNTRLLTSTPCGF--TNVLSAPSVRNLGNNRYQPGYQLSNNRFVST--SYINR 220
N A + NT +L + F N S + ++GN +LSNN+ ST +
Sbjct: 498 NLAGSIPSNTAMLKNVVMLFLQNNEFSGSIIEDIGNLTKLEHLRLSNNQLSSTVPPSLFH 557
Query: 221 ITRNNDIPNIRNVFQGISDPQINSLRQLRRMD 316
+ ++ RN+F G I L+Q+ +MD
Sbjct: 558 LDSLIELDLSRNLFSGALPVDIGHLKQIYKMD 589
>01_06_1263 +
35840502-35841308,35841763-35841969,35842272-35842370,
35843361-35843464,35844521-35844698,35844774-35845244,
35845383-35845523,35846290-35846349,35846427-35846490,
35847295-35847524,35847606-35847704
Length = 819
Score = 30.3 bits (65), Expect = 1.1
Identities = 17/66 (25%), Positives = 31/66 (46%)
Frame = +2
Query: 143 NLGNNRYQPGYQLSNNRFVSTSYINRITRNNDIPNIRNVFQGISDPQINSLRQLRRMDNV 322
N G ++ PGY SNN + S S+ + +N + + +Q + N+ + + N
Sbjct: 143 NAGAHQTAPGYATSNNYYQSNSWTGGSSGDNHVQS----YQSYTPSDTNAAQSSSSLPN- 197
Query: 323 PDFHYH 340
+HYH
Sbjct: 198 NSYHYH 203
>04_01_0260 - 3506672-3508981
Length = 769
Score = 28.7 bits (61), Expect = 3.3
Identities = 18/75 (24%), Positives = 33/75 (44%)
Frame = +2
Query: 191 RFVSTSYINRITRNNDIPNIRNVFQGISDPQINSLRQLRRMDNVPDFHYHTKQTRSNAVR 370
RF+ + + R N++ P ++ G Q N LRQ R ++ ++ + Q + NA
Sbjct: 359 RFILSLNLFRFLVNSNNPTRYRMWSGTIG-QYNLLRQCTRQEDEKTSNFWSSQWKKNAPE 417
Query: 371 QNFPETNVRTPEGVQ 415
+ E G+Q
Sbjct: 418 DTWMEYEYHNSRGIQ 432
>03_02_1027 +
13422698-13422914,13424899-13424959,13425366-13425464,
13428959-13429361
Length = 259
Score = 28.7 bits (61), Expect = 3.3
Identities = 12/54 (22%), Positives = 23/54 (42%)
Frame = +1
Query: 256 CISGHFRPSNKLIAPIAAHGQRARLSLPHQTDAIQCSQTKLSGDQRAHARRCSK 417
C++ H S+ +A + + AR L + + + D + H R C+K
Sbjct: 204 CLTAHATASDGKVAQLETELEVARDDLQKMKEIVASNDVAFQNDSKIHPRNCAK 257
>07_03_1027 -
23371826-23372006,23372110-23372171,23372595-23374335,
23374609-23374704,23374967-23375043,23376807-23377307
Length = 885
Score = 28.3 bits (60), Expect = 4.4
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +2
Query: 176 QLSNNRFVSTSYINRITRNNDIPNIRNVFQGISDPQINS 292
+ ++N F+S+S I+ + ++ R VF GI P I S
Sbjct: 536 RFNDNIFISSSLIDMYCKCGNVDIARRVFNGIQSPDIVS 574
>04_04_0500 - 25677767-25680850
Length = 1027
Score = 28.3 bits (60), Expect = 4.4
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +2
Query: 182 SNNRFVSTSYINRITRNNDIPNIRNVFQGISDP 280
S++ F + ++ + D+PN R VF GI+ P
Sbjct: 190 SSSVFCEAALVDMYAKCGDVPNARRVFDGIACP 222
>06_03_0077 +
16284106-16284128,16284552-16284795,16285490-16285591,
16286347-16287057
Length = 359
Score = 27.9 bits (59), Expect = 5.8
Identities = 20/58 (34%), Positives = 27/58 (46%)
Frame = +1
Query: 334 LPHQTDAIQCSQTKLSGDQRAHARRCSKRTAAKPPFT*SHENLESSMSGHTLGRRRLS 507
LP A + +L D A A R + TA + PF +H +E +G GRRR S
Sbjct: 39 LPLAPSASRTKSPRLVLDHLAKAYRVLETTAQEAPFELNHLYVEMGSAGDK-GRRRRS 95
>03_06_0774 + 36171177-36173099
Length = 640
Score = 27.9 bits (59), Expect = 5.8
Identities = 15/42 (35%), Positives = 26/42 (61%)
Frame = +2
Query: 179 LSNNRFVSTSYINRITRNNDIPNIRNVFQGISDPQINSLRQL 304
LS++ VS S I+ ++ + + R+VFQ IS+P++ S L
Sbjct: 489 LSSDISVSNSLIDMYSKCKCMGDARSVFQSISEPKVVSWNAL 530
>02_05_1312 +
35642687-35642923,35643712-35643831,35644468-35644534,
35644673-35644694,35645053-35645152,35645282-35645414,
35645483-35645517,35645708-35646409,35646789-35647121,
35647337-35647601,35647665-35647999,35648105-35648177,
35648271-35648356,35648479-35648598,35648674-35648741,
35648825-35648882
Length = 917
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Frame = +1
Query: 346 TDAIQCS----QTKLSGDQRAHARRCSKRTAAKPPFT 444
+D QC +T S D R A+RC K+ +PP T
Sbjct: 700 SDVAQCPNHNHETNNSDDARIGAQRCQKKAKGRPPKT 736
>04_01_0505 +
6599181-6599249,6599537-6599632,6599931-6599962,
6601191-6601428,6601852-6601905,6601923-6602130,
6602353-6602590,6602788-6602962,6603074-6603442
Length = 492
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -2
Query: 261 NTLRMLGISLLRVILFMYEVLTNRLLD 181
N +R+LG+ L L +YE + NR LD
Sbjct: 202 NLVRLLGVCLQEEKLLVYEYMPNRSLD 228
>01_06_0958 -
33357689-33357997,33358135-33358284,33358371-33358511,
33359807-33360592
Length = 461
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +1
Query: 262 SGHFRPSNKLIAPIAAHGQRARLSLPHQTDA 354
S R + +A AHG+ L LPH TDA
Sbjct: 192 SSESRGATLAVAAATAHGREEPLLLPHGTDA 222
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,709,240
Number of Sequences: 37544
Number of extensions: 340471
Number of successful extensions: 840
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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