Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0544
         (559 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43996| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.64 
SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.1  
SB_22944| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.1  
SB_6767| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.1  
SB_39630| Best HMM Match : Pro_Al_protease (HMM E-Value=1.8)           30   1.1  
SB_14319| Best HMM Match : Pedibin (HMM E-Value=2.5)                   30   1.1  
SB_10064| Best HMM Match : Strep_SA_rep (HMM E-Value=8.4)              30   1.1  
SB_54511| Best HMM Match : Strep_SA_rep (HMM E-Value=8)                29   1.9  
SB_35167| Best HMM Match : zf-HIT (HMM E-Value=0.046)                  29   1.9  
SB_27113| Best HMM Match : Str_synth (HMM E-Value=0)                   29   1.9  
SB_9323| Best HMM Match : MutS_IV (HMM E-Value=3.2)                    29   1.9  
SB_2482| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.9  
SB_30334| Best HMM Match : Myosin_head (HMM E-Value=8.8e-12)           29   3.4  
SB_4148| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.4  
SB_11107| Best HMM Match : Plasmodium_HRP (HMM E-Value=10)             28   5.9  
SB_41631| Best HMM Match : Ank (HMM E-Value=0.00018)                   28   5.9  

>SB_43996| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1056

 Score = 31.1 bits (67), Expect = 0.64
 Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
 Frame = +1

Query: 187 QPVCEHFIHKQNHS*QRYPQHTQCISGHFRPSNKLIAPIAAHGQRA-RLSLPHQTDAIQC 363
           QP  EH      HS Q  P+H+Q    H +PS +   P   H Q +   SLP Q  ++  
Sbjct: 771 QPSPEHSQPSPEHS-QPSPEHSQPSPEHSQPSPEHCQPSPEHSQPSPEHSLPSQEHSLP- 828

Query: 364 SQTKLSGDQ 390
           S T   G+Q
Sbjct: 829 SPTSSLGEQ 837



 Score = 28.3 bits (60), Expect = 4.5
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = +1

Query: 187 QPVCEHFIHKQNHS*QRYPQHTQCISGHFRPSNKLIAPIAAHGQ 318
           QP  EH +  Q HS    P+H+Q    H +PS +   P   H Q
Sbjct: 750 QPSPEHSLPSQEHSLPS-PEHSQPSPEHSQPSPEHSQPSPEHSQ 792


>SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4527

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +2

Query: 281  QINSLRQLRRMDNVPDFHYHTKQTRSNAVRQNFPETNVRTPEGVQN 418
            ++NSL  L   D+  +FH  ++   S A++ +F   N +T E   N
Sbjct: 3018 EVNSLSMLSTTDSSFNFHEQSQSVTSGAIKSSFSLKNSQTSEESSN 3063


>SB_22944| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2468

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = +2

Query: 233 NDIPNIRNVF--QGISDPQINSLRQLRRMDNVP 325
           +D PN+RN    +  S+P   SL  L R DNVP
Sbjct: 235 SDTPNVRNALGPKNTSEPHTLSLSHLPRSDNVP 267


>SB_6767| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 279

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = +2

Query: 233 NDIPNIRNVF--QGISDPQINSLRQLRRMDNVP 325
           +D PN+RN    +  S+P   SL  L R DNVP
Sbjct: 235 SDTPNVRNALGPKNTSEPHTLSLSHLPRSDNVP 267


>SB_39630| Best HMM Match : Pro_Al_protease (HMM E-Value=1.8)
          Length = 245

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = +2

Query: 233 NDIPNIRNVF--QGISDPQINSLRQLRRMDNVP 325
           +D PN+RN    +  S+P   SL  L R DNVP
Sbjct: 157 SDTPNVRNALGPKNTSEPHTLSLSHLPRSDNVP 189


>SB_14319| Best HMM Match : Pedibin (HMM E-Value=2.5)
          Length = 226

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = +2

Query: 233 NDIPNIRNVF--QGISDPQINSLRQLRRMDNVP 325
           +D PN+RN    +  S+P   SL  L R DNVP
Sbjct: 114 SDTPNVRNALGPKNTSEPHTLSLSHLPRSDNVP 146


>SB_10064| Best HMM Match : Strep_SA_rep (HMM E-Value=8.4)
          Length = 216

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = +2

Query: 233 NDIPNIRNVF--QGISDPQINSLRQLRRMDNVP 325
           +D PN+RN    +  S+P   SL  L R DNVP
Sbjct: 104 SDTPNVRNALGPKNTSEPHTLSLSHLPRSDNVP 136


>SB_54511| Best HMM Match : Strep_SA_rep (HMM E-Value=8)
          Length = 267

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = +2

Query: 233 NDIPNIRNVF--QGISDPQINSLRQLRRMDNVP 325
           +D PN+RN    +  S+P   SL  L R DNVP
Sbjct: 114 SDTPNVRNALGPKNTSEPHTLSLFHLPRSDNVP 146


>SB_35167| Best HMM Match : zf-HIT (HMM E-Value=0.046)
          Length = 632

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +1

Query: 361 CSQTKLSGDQRAHARRCSKRTAAKPPFT*SHENLESSMSG 480
           CS+     DQR H  RC+K+   + P+T S E+  +S+ G
Sbjct: 40  CSKEHKRADQRYHRHRCNKQ-PQEVPYTDSPESSMASLLG 78


>SB_27113| Best HMM Match : Str_synth (HMM E-Value=0)
          Length = 607

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = +2

Query: 233 NDIPNIRNVF--QGISDPQINSLRQLRRMDNVP 325
           +D PN+RN    +  S+P   SL  L R DNVP
Sbjct: 547 SDTPNVRNALGPKNTSEPHTLSLFHLPRSDNVP 579


>SB_9323| Best HMM Match : MutS_IV (HMM E-Value=3.2)
          Length = 245

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = +2

Query: 233 NDIPNIRNVF--QGISDPQINSLRQLRRMDNVP 325
           +D PN+RN    +  S+P   SL  L R DNVP
Sbjct: 157 SDTPNVRNALGPKNTSEPHTLSLFHLPRSDNVP 189


>SB_2482| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 279

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = +2

Query: 233 NDIPNIRNVF--QGISDPQINSLRQLRRMDNVP 325
           +D PN+RN    +  S+P   SL  L R DNVP
Sbjct: 235 SDTPNVRNALGPKNTSEPHTLSLFHLPRSDNVP 267


>SB_30334| Best HMM Match : Myosin_head (HMM E-Value=8.8e-12)
          Length = 280

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
 Frame = +2

Query: 137 VRNLGNNRYQPGYQLSNNRFVSTSYINRITRNNDIPNIRNVFQG-ISDPQINSLRQLRRM 313
           +++ G   Y   Y+L          + R+TR  D  N  N  QG +SDP ++     +RM
Sbjct: 53  MQSKGERNYHVFYRLCAGAPKQIKDMLRLTRAQDF-NYLN--QGSLSDPNLDDTSDFKRM 109

Query: 314 DNVPDFHYHTKQTRSNAVR 370
           D   D    +K+ +SN  R
Sbjct: 110 DASMDNVGFSKEEKSNIYR 128


>SB_4148| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 201

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = +2

Query: 143 NLGNNRYQPGYQLSNNRFVSTSYINRITRNNDIPNIRNVFQGISDPQI 286
           N  NN      + +NNR  S++  NR  RNND  NI N+ +  S+ ++
Sbjct: 94  NNSNNNSNNNNRSNNNRNNSSNNNNRSNRNNDSNNI-NISRNNSNSRV 140


>SB_11107| Best HMM Match : Plasmodium_HRP (HMM E-Value=10)
          Length = 296

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 32/136 (23%), Positives = 54/136 (39%), Gaps = 9/136 (6%)
 Frame = +2

Query: 77  NTRLLTSTPCGFTNVLSAPSVRNLGNNRYQPGYQLSNNRFVSTSY--INRITRNNDIPNI 250
           N+   T+     TN     S+ N   +   P     N+   +T +  +   TR+N +PN 
Sbjct: 79  NSLTNTTRHNSLTNTTRHNSLTNTTRHNSLPNTARHNSLTNTTRHNSLTNTTRHNSLPNT 138

Query: 251 RNVFQGISDPQINSLRQLRRMDNVPDFHYHT---KQTRSNAV----RQNFPETNVRTPEG 409
                  +  + NSL  + R +++P+   H      TR N++    R N P    R    
Sbjct: 139 ARHKSPTNTTRHNSLPNITRHNSLPNTARHNSLPNTTRHNSLPNTARHNSPPNTTR-HNS 197

Query: 410 VQNALQQNPRLHNHMR 457
           + N  + N  LH+  R
Sbjct: 198 LPNTTRHN-SLHSTTR 212


>SB_41631| Best HMM Match : Ank (HMM E-Value=0.00018)
          Length = 353

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +1

Query: 214 KQNHS*QRYPQHTQCI-SGHFRPSNKLIAPIAAHGQRARLSLPH 342
           KQ+H+ +R  +       GH  PS  L  P ++H   + L+LPH
Sbjct: 195 KQHHNDRRLSREEGSYREGHRSPSQPLFQPPSSHLISSHLTLPH 238


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,410,993
Number of Sequences: 59808
Number of extensions: 416051
Number of successful extensions: 1071
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1066
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1300738331
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)