Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0544
(559 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68000-3|CAA91971.1| 1225|Caenorhabditis elegans Hypothetical pr... 31 0.74
Z78419-3|CAB01701.2| 1632|Caenorhabditis elegans Hypothetical pr... 30 0.98
AF159143-1|AAF80367.1| 1632|Caenorhabditis elegans RNA-directed ... 30 0.98
Z78419-7|CAC42290.1| 1601|Caenorhabditis elegans Hypothetical pr... 29 2.3
AF159144-1|AAF80368.1| 1601|Caenorhabditis elegans RRF-1 protein. 29 2.3
U41035-2|AAM69088.1| 1371|Caenorhabditis elegans Uncoordinated p... 29 3.0
U41035-1|AAB37028.2| 1563|Caenorhabditis elegans Uncoordinated p... 29 3.0
AF257062-1|AAK49331.1| 1563|Caenorhabditis elegans Rab3-interact... 29 3.0
AC084159-16|AAK39357.1| 205|Caenorhabditis elegans Hypothetical... 28 4.0
U42843-5|AAA83597.2| 375|Caenorhabditis elegans Beclin (human a... 28 5.2
>Z68000-3|CAA91971.1| 1225|Caenorhabditis elegans Hypothetical protein
C05C9.3 protein.
Length = 1225
Score = 30.7 bits (66), Expect = 0.74
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Frame = +2
Query: 227 RNNDIPNIRNVFQGISDPQINSLRQLRRM-DNVPDFHYHTKQTRSNAVRQNFPETNVRTP 403
R + + ++N + Q NS +Q ++ + + ++H +Q V Q+FP +V+
Sbjct: 1082 RQDGMHQMQNQLHHHQNFQFNSGQQATQVHEQQQNQNHHVRQAVQEEVFQSFPRHDVQRH 1141
Query: 404 EGVQNALQQNPRLHNHMRTLK 466
Q QQN R H+ + K
Sbjct: 1142 IHGQTNYQQNQRQHSQQQVYK 1162
>Z78419-3|CAB01701.2| 1632|Caenorhabditis elegans Hypothetical protein
F26A3.3 protein.
Length = 1632
Score = 30.3 bits (65), Expect = 0.98
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -3
Query: 347 VWCGNESLARCPCAAIGAMSLFEGLKCPEIHCVC 246
V G L + PC G + +FE + PE+H +C
Sbjct: 920 VLTGTVLLTKNPCIVAGDVRIFEAVDIPELHHMC 953
>AF159143-1|AAF80367.1| 1632|Caenorhabditis elegans RNA-directed RNA
polymerase relatedEGO-1 protein.
Length = 1632
Score = 30.3 bits (65), Expect = 0.98
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -3
Query: 347 VWCGNESLARCPCAAIGAMSLFEGLKCPEIHCVC 246
V G L + PC G + +FE + PE+H +C
Sbjct: 920 VLTGTVLLTKNPCIVAGDVRIFEAVDIPELHHMC 953
>Z78419-7|CAC42290.1| 1601|Caenorhabditis elegans Hypothetical
protein F26A3.8 protein.
Length = 1601
Score = 29.1 bits (62), Expect = 2.3
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -3
Query: 338 GNESLARCPCAAIGAMSLFEGLKCPEIHCVC 246
G L + PC G + +FE + PE+H +C
Sbjct: 896 GTVLLTKNPCIVPGDVRIFEAVDIPELHHMC 926
>AF159144-1|AAF80368.1| 1601|Caenorhabditis elegans RRF-1 protein.
Length = 1601
Score = 29.1 bits (62), Expect = 2.3
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -3
Query: 338 GNESLARCPCAAIGAMSLFEGLKCPEIHCVC 246
G L + PC G + +FE + PE+H +C
Sbjct: 896 GTVLLTKNPCIVPGDVRIFEAVDIPELHHMC 926
>U41035-2|AAM69088.1| 1371|Caenorhabditis elegans Uncoordinated
protein 10, isoform b protein.
Length = 1371
Score = 28.7 bits (61), Expect = 3.0
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +1
Query: 310 HGQRARLSLPHQTDAI-QCSQTKLSGDQRAHARRCSKRTAAKPPFT*SHENLESSMSGHT 486
H +LSLPH A+ + T S ++ + S P + ++ +GH
Sbjct: 781 HPALQQLSLPHSQSAVFPHNNTLTSRNRSTSSYYYSDVPDLGVPSNREMQESQAFGTGHI 840
Query: 487 LGRRRLSFVYRRH 525
GR +SFVY H
Sbjct: 841 FGRIEVSFVYSHH 853
>U41035-1|AAB37028.2| 1563|Caenorhabditis elegans Uncoordinated
protein 10, isoform a protein.
Length = 1563
Score = 28.7 bits (61), Expect = 3.0
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +1
Query: 310 HGQRARLSLPHQTDAI-QCSQTKLSGDQRAHARRCSKRTAAKPPFT*SHENLESSMSGHT 486
H +LSLPH A+ + T S ++ + S P + ++ +GH
Sbjct: 781 HPALQQLSLPHSQSAVFPHNNTLTSRNRSTSSYYYSDVPDLGVPSNREMQESQAFGTGHI 840
Query: 487 LGRRRLSFVYRRH 525
GR +SFVY H
Sbjct: 841 FGRIEVSFVYSHH 853
>AF257062-1|AAK49331.1| 1563|Caenorhabditis elegans Rab3-interacting
molecule UNC-10 protein.
Length = 1563
Score = 28.7 bits (61), Expect = 3.0
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +1
Query: 310 HGQRARLSLPHQTDAI-QCSQTKLSGDQRAHARRCSKRTAAKPPFT*SHENLESSMSGHT 486
H +LSLPH A+ + T S ++ + S P + ++ +GH
Sbjct: 781 HPALQQLSLPHSQSAVFPHNNTLTSRNRSTSSYYYSDVPDLGVPSNREMQESQAFGTGHI 840
Query: 487 LGRRRLSFVYRRH 525
GR +SFVY H
Sbjct: 841 FGRIEVSFVYSHH 853
>AC084159-16|AAK39357.1| 205|Caenorhabditis elegans Hypothetical
protein Y73B3A.7 protein.
Length = 205
Score = 28.3 bits (60), Expect = 4.0
Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 1/94 (1%)
Frame = +2
Query: 167 PGYQLSNNRFVSTSYINRITRNNDIPNIRNVFQGISDPQINSLRQLRRMDNVPDFHYHTK 346
P L NR V + + + NND N +N Q I PQ+ ++ +R+ Y K
Sbjct: 3 PKNLLKKNRIVIEASLV-LHNNNDNNNNKNRMQMIMAPQLRRIQMVRK----SIMGYRGK 57
Query: 347 QTRSNAVRQNFPETNVRTPEGVQNALQQ-NPRLH 445
+ ++ T+ R P +N Q RLH
Sbjct: 58 RKTDQQLKSTNNPTSSRLPLNTKNVAQALGGRLH 91
>U42843-5|AAA83597.2| 375|Caenorhabditis elegans Beclin (human
autophagy) homologprotein 1 protein.
Length = 375
Score = 27.9 bits (59), Expect = 5.2
Identities = 18/87 (20%), Positives = 40/87 (45%), Gaps = 6/87 (6%)
Frame = +2
Query: 206 SYINRITRNN---DIPNIRNVFQGISDPQINSLRQLRRM---DNVPDFHYHTKQTRSNAV 367
+YIN + N+ IP+++ Q +SD + +QL+++ + D TK+ + A
Sbjct: 92 TYINYLKENHPTTSIPDLKAKLQNVSDEEKELEQQLKKLLAEEEQLDLDLQTKRRTAEAA 151
Query: 368 RQNFPETNVRTPEGVQNALQQNPRLHN 448
+ E + + ++ + LH+
Sbjct: 152 SEKSGELWKKYRDNLRQVFEDQDELHS 178
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,382,684
Number of Sequences: 27780
Number of extensions: 304108
Number of successful extensions: 737
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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