Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0544
         (559 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    21   6.4  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    21   6.4  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   6.4  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   6.4  

>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 8/31 (25%), Positives = 17/31 (54%)
 Frame = +2

Query: 182 SNNRFVSTSYINRITRNNDIPNIRNVFQGIS 274
           +NN + + +Y N    NN+  N + ++  I+
Sbjct: 92  NNNNYNNNNYNNYNYNNNNYNNYKKLYYNIN 122


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 17/65 (26%), Positives = 25/65 (38%)
 Frame = +2

Query: 143 NLGNNRYQPGYQLSNNRFVSTSYINRITRNNDIPNIRNVFQGISDPQINSLRQLRRMDNV 322
           N  NN Y+  Y   N +    +YI  I     IP    V+ G   P+      +   + +
Sbjct: 323 NYNNNNYKYNYNNYNKKLYYKNYIINI---EQIPVPVPVYYGNFPPRPMG-PWISMQEQI 378

Query: 323 PDFHY 337
           P F Y
Sbjct: 379 PRFRY 383


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 492 AKSMPTHATFKVLM*LC 442
           A ++P HAT +  M LC
Sbjct: 439 ASNIPVHATLEKFMILC 455


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -1

Query: 52  RIQFIDYAXICKKTGTR 2
           R QFID    C K G R
Sbjct: 94  REQFIDMVARCNKAGVR 110


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,916
Number of Sequences: 438
Number of extensions: 3304
Number of successful extensions: 16
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16072521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)