Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0544
         (559 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g15620.1 68418.m01828 F-box family protein contains F-box dom...    34   0.074
At1g32190.1 68414.m03959 expressed protein                             33   0.13 
At5g15260.1 68418.m01787 expressed protein predicted proteins, A...    28   4.9  
At4g39770.1 68417.m05632 trehalose-6-phosphate phosphatase, puta...    28   4.9  
At2g42270.1 68415.m05232 U5 small nuclear ribonucleoprotein heli...    28   4.9  
At3g01810.1 68416.m00123 expressed protein                             27   8.5  

>At5g15620.1 68418.m01828 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 440

 Score = 33.9 bits (74), Expect = 0.074
 Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
 Frame = +2

Query: 11  GFFTNXRIVNKLYPNQASFVADNTRLLTSTPCGFTNVLSA-PSVRNLGNNRYQPGYQLSN 187
           GF  +    N L P   + + D+ R   S  C FT +LSA P +  L  +R         
Sbjct: 131 GFVIDILPKNALLPALKTLILDSVRFYASDGCAFTRLLSASPVLEELVIDRLN-WEHWKG 189

Query: 188 NRFVSTSYINRIT 226
           +RFVS+  + R+T
Sbjct: 190 SRFVSSPTLKRLT 202


>At1g32190.1 68414.m03959 expressed protein
          Length = 422

 Score = 33.1 bits (72), Expect = 0.13
 Identities = 20/65 (30%), Positives = 24/65 (36%)
 Frame = -3

Query: 326 LARCPCAAIGAMSLFEGLKCPEIHCVCWGYRCYE*FCLCMKCSQTGC*IIDSPADICCFQ 147
           ++ C C      S F   KCP+  C CW          C+KC  T C         CC  
Sbjct: 349 VSSCCCPTFKCSSCFGKPKCPK--CSCW---------KCLKCPDTEC-----CRSSCCCS 392

Query: 146 GCVHW 132
           GC  W
Sbjct: 393 GCFSW 397


>At5g15260.1 68418.m01787 expressed protein predicted proteins,
           Arabidopsis thaliana
          Length = 234

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 9/18 (50%), Positives = 16/18 (88%)
 Frame = +2

Query: 311 MDNVPDFHYHTKQTRSNA 364
           M + PDFH+H+KQ+R+++
Sbjct: 17  MAHSPDFHHHSKQSRTSS 34


>At4g39770.1 68417.m05632 trehalose-6-phosphate phosphatase,
           putative similar to trehalose-6-phosphate phosphatase
           (AtTPPB) [Arabidopsis thaliana] GI:2944180; contains
           Pfam profile PF02358: Trehalose-phosphatase
          Length = 349

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
 Frame = +2

Query: 74  DNTRLLTSTPCGFTNVLSAPSVRNLGNNRYQPGYQLSNNRFVSTSYINRITRNN--DIPN 247
           D+  LL      F  ++     + +   +  PG Q+ NN+F  + +  R+  NN  D+ N
Sbjct: 175 DSKSLLCQPATEFLPMIDEVYHKLVEKTKSTPGAQVENNKFCVSVHFRRVDENNWSDLAN 234

Query: 248 -IRNVFQ 265
            +R+V +
Sbjct: 235 QVRSVMK 241


>At2g42270.1 68415.m05232 U5 small nuclear ribonucleoprotein
           helicase, putative 
          Length = 2172

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 19/56 (33%), Positives = 26/56 (46%)
 Frame = +2

Query: 29  RIVNKLYPNQASFVADNTRLLTSTPCGFTNVLSAPSVRNLGNNRYQPGYQLSNNRF 196
           R+ +K+Y   A F ADN  L   T  G TNV     +  LG N   PG   ++  +
Sbjct: 508 RVQSKVY-GTALFKADNILLCAPTGAGKTNVAVLTILHQLGLN-MNPGGTFNHGNY 561


>At3g01810.1 68416.m00123 expressed protein
          Length = 921

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +2

Query: 326 DFHYHTKQTRSNAVRQNFPETNVRTPEGVQNALQQNPRLHNHMRTLKVA 472
           D   H+  T S++  ++    +VRT E     + +NPR + H R+  V+
Sbjct: 207 DISSHSSLTVSSSTLESNGGFSVRTEEEEHERINKNPRGNGHERSKSVS 255


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,376,732
Number of Sequences: 28952
Number of extensions: 265471
Number of successful extensions: 624
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1062855648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)