Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0543
         (810 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    26   0.41 
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    25   0.94 
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    25   0.94 
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    21   8.8  

>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 25.8 bits (54), Expect = 0.41
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 156 GKAAVALYNSDLELMSQGGWR 218
           G+A +  YN  +EL  +GGW+
Sbjct: 292 GEAGMLGYNEIVELQKEGGWK 312


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 24.6 bits (51), Expect = 0.94
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -3

Query: 148 PKNTTLRQKQVE*WYTPMRAHSTP 77
           P+N+TLR++Q+  +Y   R   +P
Sbjct: 116 PRNSTLRRQQMSSYYNESRVMMSP 139


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 24.6 bits (51), Expect = 0.94
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -3

Query: 148 PKNTTLRQKQVE*WYTPMRAHSTP 77
           P+N+TLR++Q+  +Y   R   +P
Sbjct: 116 PRNSTLRRQQMSSYYNESRVMMSP 139


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -3

Query: 313 CYGFFFCLDGRTSSQPC 263
           C  F++C+DG+ +   C
Sbjct: 122 CDKFYYCVDGKYNMITC 138


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,190
Number of Sequences: 336
Number of extensions: 3586
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22102797
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)