Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0542
         (671 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo...    45   9e-06
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    32   0.065
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    27   3.3  
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   3.3  
SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   7.5  
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase...    25   9.9  
SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb...    25   9.9  
SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    25   9.9  

>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
           Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 805

 Score = 45.2 bits (102), Expect = 9e-06
 Identities = 25/59 (42%), Positives = 34/59 (57%)
 Frame = -3

Query: 372 IQFKRIPFPITLAFAMTINKSQGQTMSVCGLDLSTPCFSHGQLYVACSRVGKPSSLFVL 196
           +Q  R   P+ LA+A++I+K+QGQT+    +DL    F  GQ YVA SR      L VL
Sbjct: 704 VQASRSQIPLILAYAISIHKAQGQTLDRVKVDLGR-VFEKGQAYVALSRATTQEGLQVL 761


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 32.3 bits (70), Expect = 0.065
 Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
 Frame = +2

Query: 437 FKMVPSLTFFIIFLMTNRVPLLS-RGGFKLRSKIIGDSTFNCKLCGGMPGKSSEFKNSVG 613
           +K + +  FF I L++N   L S   GF LR  ++  ++    LC   P    E+KNS G
Sbjct: 19  WKYIQACIFFAIILISNFYGLKSFTDGFLLRRAVLNQTS----LCENPPADVREWKNSSG 74

Query: 614 KFTASVLSQTVSI 652
            +   +  + V +
Sbjct: 75  CWAPKIFERAVIV 87


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2493

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +2

Query: 167 TIFFVSPSLANTNKLDGLPTREHATYNCP 253
           T  FV P L+    L+ LPT E  T+NCP
Sbjct: 711 TAVFVKPDLS----LEKLPTLEINTFNCP 735


>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 628

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
 Frame = -3

Query: 363 KRIPFPITLAFAMTINKSQGQTM--SVCGLDLSTPCFSHGQLYVACSRVGKPSSLFVLAK 190
           + + + I+L  ++T+NK QG ++  +V GL+  T     G  YV+      PS+L +   
Sbjct: 169 RSVTYSISL--SLTMNKHQGHSLLQTVSGLNYHTLSVGTGLSYVSLIIFDLPSNLLMTRA 226

Query: 189 D 187
           D
Sbjct: 227 D 227


>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 689

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
 Frame = -1

Query: 401 EYLLYPQMCQFNLSVFH--FRLHWHLQ*LLINPKAKQC 294
           E +L      F  S++H  F  HW +  LLINP    C
Sbjct: 530 ELILKFMQRNFENSLYHQSFSSHWFISRLLINPIRMLC 567


>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
           Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1448

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
 Frame = -3

Query: 480 IKKIMKKVNEGTI-LNGKFRGENILIPRIPIIPTDVP-----IQFKRIPFPITLAFAMTI 319
           I+ ++K +  G + + GK +   ++ P  P  P+ +P     IQF R P P+        
Sbjct: 433 IQILLKPIYPGQLHMLGK-QLHTVIYPIFPSSPSSLPLLSELIQFSRRPSPVQTGMVCAA 491

Query: 318 NKSQGQTMSVC 286
           N       +VC
Sbjct: 492 NDDDEFAQTVC 502


>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 923

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -3

Query: 246 LYVACSRVGKPSSLFVLAKDGLTKN 172
           L +A S++GK +S F+   DG+T N
Sbjct: 812 LTIAVSKIGKNASGFLYLDDGVTFN 836


>SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 398

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 663 SYKSIDTVCDNTEAVNFPTEFLNSLDL 583
           S+ SI  +  N   +N P E+++ LDL
Sbjct: 238 SHDSIHHIISNNAQLNIPQEYIDVLDL 264


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,786,257
Number of Sequences: 5004
Number of extensions: 57564
Number of successful extensions: 141
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)