Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0542
(671 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0352 - 9271311-9271540,9272034-9272353,9272808-9273178 44 8e-05
01_05_0799 + 25334460-25334994,25335060-25335236,25335325-253354... 42 3e-04
03_05_0351 - 23382786-23382821,23383373-23383634,23384369-233856... 38 0.010
10_02_0129 + 5584585-5584732,5586567-5586968,5587038-5587106,558... 36 0.029
02_03_0026 - 14045653-14045874,14047023-14047215,14047518-140476... 35 0.068
09_01_0179 - 2627682-2628086 34 0.090
09_02_0133 + 4707944-4708308,4708320-4708534,4708626-4708672,470... 34 0.12
07_03_0874 - 22202699-22203070,22204239-22204874 31 0.84
02_05_1183 + 34788219-34788533,34788733-34788930,34789010-347893... 30 1.9
>02_02_0352 - 9271311-9271540,9272034-9272353,9272808-9273178
Length = 306
Score = 44.4 bits (100), Expect = 8e-05
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Frame = -3
Query: 669 LVSYKSIDTVCDNTEAVNFPTEFLNSLDLPGMPPHNLQLKVE-XXXXXXXXXXXXXXXNG 493
+V+Y S D D+ +P EFLNSL L G+PPH L+LK+ NG
Sbjct: 149 VVTYHSFDRPEDDPYNY-YPPEFLNSLTLNGLPPHVLKLKINCPIMLLRNIDPANGLCNG 207
Query: 492 TRLVIKKIMKKVNEGTILNGKFRGENI 412
TRLV+++ + + I+ G+ NI
Sbjct: 208 TRLVVREFGRNAIDVEIVVGQHAAVNI 234
>01_05_0799 + 25334460-25334994,25335060-25335236,25335325-25335447,
25335559-25335624,25335717-25336685,25336791-25336912,
25337156-25337549,25337888-25338009,25338253-25338646,
25338983-25339104,25339348-25339830,25340291-25340960,
25341713-25342224,25342484-25342540
Length = 1581
Score = 42.3 bits (95), Expect = 3e-04
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Frame = -3
Query: 660 YKSIDTVCDNTEAVNFPTEFLNSLDLPGMPPHNLQLKVEXXXXXXXXXXXXXXXNG-TRL 484
Y S D++ D+T+ ++P +FLN++ G+PPH L++KV TRL
Sbjct: 1482 YHSFDSIDDDTQN-SYPLDFLNTITPNGLPPHELKVKVNCPVILLRNLDPNNGLCNRTRL 1540
Query: 483 VIKKIMKKVNEGTILNGKFRGENILIPRIPIIPT 382
+++ V + I+ G+ + P I I T
Sbjct: 1541 MVRTFQDNVIDAEIVGGQRANKRGRAPGILSIKT 1574
>03_05_0351 - 23382786-23382821,23383373-23383634,23384369-23385675,
23385776-23386290,23386379-23386741,23386916-23387284,
23387365-23388057,23388152-23388238,23388354-23388612
Length = 1296
Score = 37.5 bits (83), Expect = 0.010
Identities = 18/41 (43%), Positives = 26/41 (63%)
Frame = -3
Query: 669 LVSYKSIDTVCDNTEAVNFPTEFLNSLDLPGMPPHNLQLKV 547
+++Y S D D+ +P EFLNSL G+PPH L+LK+
Sbjct: 1223 VMTYHSFDRADDDPHNY-YPPEFLNSLTPNGLPPHVLKLKI 1262
>10_02_0129 + 5584585-5584732,5586567-5586968,5587038-5587106,
5587181-5587234,5587309-5588214,5588313-5590283,
5590833-5591235,5591845-5591857
Length = 1321
Score = 35.9 bits (79), Expect = 0.029
Identities = 18/38 (47%), Positives = 23/38 (60%)
Frame = -3
Query: 660 YKSIDTVCDNTEAVNFPTEFLNSLDLPGMPPHNLQLKV 547
Y S D D+ +P EFLNSL G+PPH L+LK+
Sbjct: 1261 YHSFDRAEDDPHNY-YPPEFLNSLTPNGLPPHILKLKI 1297
>02_03_0026 - 14045653-14045874,14047023-14047215,14047518-14047618,
14050145-14050272,14050409-14050502,14050749-14051237,
14052622-14052915,14053602-14053732,14053829-14055440,
14055539-14055651,14055902-14056933,14057023-14057145,
14057250-14057688
Length = 1656
Score = 34.7 bits (76), Expect = 0.068
Identities = 15/38 (39%), Positives = 25/38 (65%)
Frame = -3
Query: 660 YKSIDTVCDNTEAVNFPTEFLNSLDLPGMPPHNLQLKV 547
Y S D+V D+ ++P ++LNS+ G+PPH L +K+
Sbjct: 1189 YHSFDSVDDDPHN-SYPLDYLNSITPNGLPPHELIVKI 1225
>09_01_0179 - 2627682-2628086
Length = 134
Score = 34.3 bits (75), Expect = 0.090
Identities = 14/36 (38%), Positives = 25/36 (69%)
Frame = -3
Query: 660 YKSIDTVCDNTEAVNFPTEFLNSLDLPGMPPHNLQL 553
Y S D+V D+++ N+P +FLN++ +PPH L++
Sbjct: 100 YHSFDSVDDDSQN-NYPLDFLNTITPNSLPPHELKV 134
>09_02_0133 +
4707944-4708308,4708320-4708534,4708626-4708672,
4708997-4709393,4710042-4710608,4710708-4710838,
4711274-4711747
Length = 731
Score = 33.9 bits (74), Expect = 0.12
Identities = 15/38 (39%), Positives = 26/38 (68%)
Frame = -3
Query: 660 YKSIDTVCDNTEAVNFPTEFLNSLDLPGMPPHNLQLKV 547
Y S D+V D+ + ++ +FLN++ G+PPH L++KV
Sbjct: 690 YLSFDSVDDDPQN-SYSLDFLNTITPNGLPPHELKVKV 726
>07_03_0874 - 22202699-22203070,22204239-22204874
Length = 335
Score = 31.1 bits (67), Expect = 0.84
Identities = 23/64 (35%), Positives = 28/64 (43%)
Frame = -3
Query: 396 PIIPTDVPIQFKRIPFPITLAFAMTINKSQGQTMSVCGLDLSTPCFSHGQLYVACSRVGK 217
P TDVP +P++ A + S G T C LDLS F G + AC G
Sbjct: 17 PSAATDVP------SYPLSQAQSPANTSSGGSTSPPCHLDLSAELF--GGVAAACGAGGG 68
Query: 216 PSSL 205
P SL
Sbjct: 69 PGSL 72
>02_05_1183 +
34788219-34788533,34788733-34788930,34789010-34789359,
34789463-34789619
Length = 339
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = -3
Query: 255 HGQLYVACSRVGKPSSLFVLAKDGLTKNIVHAAA 154
HG +VAC + L +A DG T+N+++AAA
Sbjct: 91 HGVFHVACPLSNRDPELMAVAVDG-TRNVMNAAA 123
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,851,342
Number of Sequences: 37544
Number of extensions: 331986
Number of successful extensions: 715
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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