Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0542
(671 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_36931| Best HMM Match : FabA (HMM E-Value=5.5) 43 3e-04
SB_50259| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.052
SB_28309| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.091
SB_8609| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.28
SB_17277| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_12220| Best HMM Match : RVT_1 (HMM E-Value=7.3e-19) 29 4.5
SB_9823| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_50552| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00012) 28 6.0
SB_11635| Best HMM Match : Borrelia_P13 (HMM E-Value=9.9) 28 6.0
SB_55122| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_10124| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
>SB_36931| Best HMM Match : FabA (HMM E-Value=5.5)
Length = 702
Score = 42.7 bits (96), Expect = 3e-04
Identities = 22/56 (39%), Positives = 32/56 (57%)
Frame = -3
Query: 372 IQFKRIPFPITLAFAMTINKSQGQTMSVCGLDLSTPCFSHGQLYVACSRVGKPSSL 205
+ FKR P+ L +A+TI K+QGQT+ C + + + YVA SRV K S+
Sbjct: 629 VTFKRTVLPVVLGYAITICKAQGQTLHKCIVWMDSDFVPAASGYVALSRVRKLESI 684
>SB_50259| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 713
Score = 35.1 bits (77), Expect = 0.052
Identities = 21/55 (38%), Positives = 31/55 (56%)
Frame = -3
Query: 363 KRIPFPITLAFAMTINKSQGQTMSVCGLDLSTPCFSHGQLYVACSRVGKPSSLFV 199
+R P LA+++TI+KSQG T+ +D+ + G YVA SRV SS +
Sbjct: 418 ERQQLPRKLAWSLTIHKSQGLTLPKAWVDIGKSEKTPGISYVALSRVKALSSCVI 472
>SB_28309| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 550
Score = 34.3 bits (75), Expect = 0.091
Identities = 19/56 (33%), Positives = 31/56 (55%)
Frame = -3
Query: 366 FKRIPFPITLAFAMTINKSQGQTMSVCGLDLSTPCFSHGQLYVACSRVGKPSSLFV 199
++R P LA+++TI+KS+G T+ +D+ + G Y A SRV SS +
Sbjct: 339 YERQQLPFKLAWSLTIHKSEGITLPKAWVDIGKSEKTPGISYAALSRVKALSSCVI 394
>SB_8609| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 985
Score = 32.7 bits (71), Expect = 0.28
Identities = 19/46 (41%), Positives = 27/46 (58%)
Frame = -3
Query: 360 RIPFPITLAFAMTINKSQGQTMSVCGLDLSTPCFSHGQLYVACSRV 223
R FPI L++A+T++++QG T+ L S F G YV SRV
Sbjct: 837 RRQFPIQLSWAITVHEAQGLTLDKVVLTCSRE-FVFGLTYVGLSRV 881
>SB_17277| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 290
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -3
Query: 351 FPITLAFAMTINKSQGQTMSVCGLDLSTP 265
FP A+A+ I K+QGQT+ C + + +P
Sbjct: 86 FPFIPAYALPICKAQGQTLDTCIVWMDSP 114
>SB_12220| Best HMM Match : RVT_1 (HMM E-Value=7.3e-19)
Length = 2253
Score = 28.7 bits (61), Expect = 4.5
Identities = 19/58 (32%), Positives = 27/58 (46%)
Frame = -3
Query: 372 IQFKRIPFPITLAFAMTINKSQGQTMSVCGLDLSTPCFSHGQLYVACSRVGKPSSLFV 199
+ R FP+ A A TI++SQG T S ++ T YV SRV L++
Sbjct: 132 VHVMRKQFPLRPAAAKTIHRSQGDTESRIVVNFETKRAIPHIHYVGLSRVTTIDGLYI 189
>SB_9823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1329
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +2
Query: 491 VPLLSRGGFKLRSKIIGDSTFNCKLCGGMPGKSSEFKNSVGKFTAS 628
V L GG ++ GD T G +PG + F+NS +T S
Sbjct: 289 VNLTLNGGMLTLDRLSGDRTDAAFESGALPGGNVSFENSSSSYTTS 334
>SB_50552| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00012)
Length = 966
Score = 28.3 bits (60), Expect = 6.0
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = -3
Query: 372 IQFKRIPFPITLAFAMTINKSQGQTMSVCGLDLSTPCFSHGQLYVACSRVGKPSSLFV 199
+ R FP+ A TI++SQG T S ++ T + YV SRV L++
Sbjct: 650 VHLMRKQFPLRPDAAKTIHRSQGDTESRIVVNFETKRAIPHKHYVGLSRVTTIDGLYI 707
>SB_11635| Best HMM Match : Borrelia_P13 (HMM E-Value=9.9)
Length = 295
Score = 28.3 bits (60), Expect = 6.0
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = -3
Query: 372 IQFKRIPFPITLAFAMTINKSQGQTMSVCGLDLSTPCFSHGQLYVACSRVGKPSSLFV 199
+ R FP+ A A TI++SQG T S ++ T Y+ SRV L++
Sbjct: 132 VHVMRKQFPLRPAAAKTIHRSQGDTESRIVVNFETKRAIPHIHYIGLSRVTTIDGLYI 189
>SB_55122| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 296
Score = 27.9 bits (59), Expect = 7.9
Identities = 19/58 (32%), Positives = 27/58 (46%)
Frame = -3
Query: 372 IQFKRIPFPITLAFAMTINKSQGQTMSVCGLDLSTPCFSHGQLYVACSRVGKPSSLFV 199
+ R FP+ A A TI++SQG T S ++ T YV SRV L++
Sbjct: 132 VHVMRKQFPLRPAAAKTIHRSQGDTESRIVVNFETKRAIPHIHYVGLSRVITIDGLYI 189
>SB_10124| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 496
Score = 27.9 bits (59), Expect = 7.9
Identities = 19/58 (32%), Positives = 27/58 (46%)
Frame = -3
Query: 372 IQFKRIPFPITLAFAMTINKSQGQTMSVCGLDLSTPCFSHGQLYVACSRVGKPSSLFV 199
+ R FP+ A A TI++SQG T S ++ T YV SRV L++
Sbjct: 225 VHVMRKQFPLRPAAAKTIHRSQGDTESRIVVNFETKRAIPHIHYVGLSRVITIDGLYI 282
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,171,046
Number of Sequences: 59808
Number of extensions: 407927
Number of successful extensions: 983
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 982
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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