Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0542
(671 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF040649-6|AAB95006.1| 1360|Caenorhabditis elegans Hypothetical ... 96 2e-20
AF025472-7|AAB71069.1| 1466|Caenorhabditis elegans Hypothetical ... 96 2e-20
AC024749-1|AAF60434.1| 1466|Caenorhabditis elegans Hypothetical ... 96 2e-20
AC006648-1|AAF39854.1| 1486|Caenorhabditis elegans Hypothetical ... 96 2e-20
AC006770-1|AAF60594.1| 1365|Caenorhabditis elegans Hypothetical ... 95 4e-20
Z81499-1|CAB04087.1| 471|Caenorhabditis elegans Hypothetical pr... 52 5e-07
Z70683-2|CAA94592.2| 717|Caenorhabditis elegans Hypothetical pr... 28 5.3
AF016419-8|AAG24053.1| 293|Caenorhabditis elegans Serpentine re... 28 6.9
AF106573-3|AAF02106.1| 198|Caenorhabditis elegans Hypothetical ... 27 9.2
>AF040649-6|AAB95006.1| 1360|Caenorhabditis elegans Hypothetical
protein F33H12.6 protein.
Length = 1360
Score = 96.3 bits (229), Expect = 2e-20
Identities = 54/156 (34%), Positives = 82/156 (52%), Gaps = 2/156 (1%)
Frame = -3
Query: 627 EAVNFPTEFLNSLDLPGMPPHNLQLKV-EXXXXXXXXXXXXXXXNGTRLVIKKIMKKVNE 451
+ +++PTEFLN + +PPH L+LK NG+R +++ +
Sbjct: 1200 DTMHYPTEFLNKMSPSSLPPHILKLKKGSVIILLRNLDVSAGLCNGSRFIVETLASHSLG 1259
Query: 450 GTILNGKFRGENILIPRIPIIPT-DVPIQFKRIPFPITLAFAMTINKSQGQTMSVCGLDL 274
G+ +G +IPRI ++ Q +R FP+ L+FA++INK+QGQ+ S GL +
Sbjct: 1260 CRFATGERKGHFTIIPRIDCYDDKNISFQLRRTQFPVRLSFALSINKAQGQSFSKIGLWI 1319
Query: 273 STPCFSHGQLYVACSRVGKPSSLFVLAKDGLTKNIV 166
T F+HGQLYVA SRV L V + + NIV
Sbjct: 1320 PTDVFTHGQLYVALSRVRTKEGLIVKSSSNIVTNIV 1355
>AF025472-7|AAB71069.1| 1466|Caenorhabditis elegans Hypothetical
protein ZK250.9 protein.
Length = 1466
Score = 96.3 bits (229), Expect = 2e-20
Identities = 54/156 (34%), Positives = 82/156 (52%), Gaps = 2/156 (1%)
Frame = -3
Query: 627 EAVNFPTEFLNSLDLPGMPPHNLQLKV-EXXXXXXXXXXXXXXXNGTRLVIKKIMKKVNE 451
+ +++PTEFLN + +PPH L+LK NG+R +++ +
Sbjct: 1306 DTMHYPTEFLNKMSPSSLPPHILKLKKGSVIILLRNLDVSAGLCNGSRFIVETLASHSLG 1365
Query: 450 GTILNGKFRGENILIPRIPIIPT-DVPIQFKRIPFPITLAFAMTINKSQGQTMSVCGLDL 274
G+ +G +IPRI ++ Q +R FP+ L+FA++INK+QGQ+ S GL +
Sbjct: 1366 CRFATGERKGHFTIIPRIDCYDDKNISFQLRRTQFPVRLSFALSINKAQGQSFSKIGLWI 1425
Query: 273 STPCFSHGQLYVACSRVGKPSSLFVLAKDGLTKNIV 166
T F+HGQLYVA SRV L V + + NIV
Sbjct: 1426 PTDVFTHGQLYVALSRVRTKEGLIVKSSSNIVTNIV 1461
>AC024749-1|AAF60434.1| 1466|Caenorhabditis elegans Hypothetical
protein Y16E11A.2 protein.
Length = 1466
Score = 96.3 bits (229), Expect = 2e-20
Identities = 54/156 (34%), Positives = 82/156 (52%), Gaps = 2/156 (1%)
Frame = -3
Query: 627 EAVNFPTEFLNSLDLPGMPPHNLQLKV-EXXXXXXXXXXXXXXXNGTRLVIKKIMKKVNE 451
+ +++PTEFLN + +PPH L+LK NG+R +++ +
Sbjct: 1306 DTMHYPTEFLNKMSPSSLPPHILKLKKGSVIILLRNLDVSAGLCNGSRFIVETLASHSLG 1365
Query: 450 GTILNGKFRGENILIPRIPIIPT-DVPIQFKRIPFPITLAFAMTINKSQGQTMSVCGLDL 274
G+ +G +IPRI ++ Q +R FP+ L+FA++INK+QGQ+ S GL +
Sbjct: 1366 CRFATGERKGHFTIIPRIDCYDDKNISFQLRRTQFPVRLSFALSINKAQGQSFSKIGLWI 1425
Query: 273 STPCFSHGQLYVACSRVGKPSSLFVLAKDGLTKNIV 166
T F+HGQLYVA SRV L V + + NIV
Sbjct: 1426 PTDVFTHGQLYVALSRVRTKEGLIVKSSSNIVTNIV 1461
>AC006648-1|AAF39854.1| 1486|Caenorhabditis elegans Hypothetical
protein F59H6.5 protein.
Length = 1486
Score = 96.3 bits (229), Expect = 2e-20
Identities = 54/156 (34%), Positives = 82/156 (52%), Gaps = 2/156 (1%)
Frame = -3
Query: 627 EAVNFPTEFLNSLDLPGMPPHNLQLKV-EXXXXXXXXXXXXXXXNGTRLVIKKIMKKVNE 451
+ +++PTEFLN + +PPH L+LK NG+R +++ +
Sbjct: 1326 DTMHYPTEFLNKMSPSSLPPHILKLKKGSVIILLRNLDVSAGLCNGSRFIVETLASHSLG 1385
Query: 450 GTILNGKFRGENILIPRIPIIPT-DVPIQFKRIPFPITLAFAMTINKSQGQTMSVCGLDL 274
G+ +G +IPRI ++ Q +R FP+ L+FA++INK+QGQ+ S GL +
Sbjct: 1386 CRFATGERKGHFTIIPRIDCYDDKNISFQLRRTQFPVRLSFALSINKAQGQSFSKIGLWI 1445
Query: 273 STPCFSHGQLYVACSRVGKPSSLFVLAKDGLTKNIV 166
T F+HGQLYVA SRV L V + + NIV
Sbjct: 1446 PTDVFTHGQLYVALSRVRTKEGLIVKSSSNIVTNIV 1481
>AC006770-1|AAF60594.1| 1365|Caenorhabditis elegans Hypothetical
protein Y46B2A.2 protein.
Length = 1365
Score = 95.1 bits (226), Expect = 4e-20
Identities = 54/156 (34%), Positives = 81/156 (51%), Gaps = 2/156 (1%)
Frame = -3
Query: 627 EAVNFPTEFLNSLDLPGMPPHNLQLKV-EXXXXXXXXXXXXXXXNGTRLVIKKIMKKVNE 451
+ +++PTEFLN + +PPH L+LK NG+R +++ +
Sbjct: 1205 DTMHYPTEFLNKMSPSSLPPHILKLKKGSVIILLRNLDVSAGLCNGSRFIVETLASHSLG 1264
Query: 450 GTILNGKFRGENILIPRIPIIPT-DVPIQFKRIPFPITLAFAMTINKSQGQTMSVCGLDL 274
G+ +G +IPRI ++ Q +R FP+ L+FA++INK+QGQ+ S GL +
Sbjct: 1265 CRFATGERKGHFTIIPRIDCYDDKNISFQLRRTQFPVRLSFALSINKAQGQSFSKIGLWI 1324
Query: 273 STPCFSHGQLYVACSRVGKPSSLFVLAKDGLTKNIV 166
T F+HGQLYVA SRV L V + NIV
Sbjct: 1325 PTDVFTHGQLYVALSRVRTKEGLIVKFSSNIVTNIV 1360
>Z81499-1|CAB04087.1| 471|Caenorhabditis elegans Hypothetical
protein F11C3.1 protein.
Length = 471
Score = 51.6 bits (118), Expect = 5e-07
Identities = 25/69 (36%), Positives = 38/69 (55%)
Frame = -3
Query: 357 IPFPITLAFAMTINKSQGQTMSVCGLDLSTPCFSHGQLYVACSRVGKPSSLFVLAKDGLT 178
+ FP++L FA TI+ SQG++ GL CF HG +Y A SRV + V +D +
Sbjct: 403 LQFPVSLNFASTIHGSQGKSFEKLGLYKLNECFEHGMIYTAISRVRRFEDYKVFTEDTVI 462
Query: 177 KNIVHAAAL 151
+N + + L
Sbjct: 463 ENKIEQSLL 471
>Z70683-2|CAA94592.2| 717|Caenorhabditis elegans Hypothetical
protein F13B12.3 protein.
Length = 717
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/22 (54%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Frame = +2
Query: 248 CPCEKHGVLKSKPQ-TDIVWPW 310
C G LKS P TD+VWPW
Sbjct: 463 CHISLAGHLKSTPNITDVVWPW 484
>AF016419-8|AAG24053.1| 293|Caenorhabditis elegans Serpentine
receptor, class x protein6 protein.
Length = 293
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -3
Query: 414 ILIPRIP-IIPTDVPIQFKRIPFPITL 337
IL +P I+P D PI F +PF +TL
Sbjct: 222 ILFQILPYIVPADQPIWFSSVPFLVTL 248
>AF106573-3|AAF02106.1| 198|Caenorhabditis elegans Hypothetical
protein F52D2.10 protein.
Length = 198
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = +2
Query: 560 KLCGGMPGKSSEFKNSVGKFTASVLSQTVSIDLYDT 667
K+C G+ ++F+ +VGK T ++ VS++L +T
Sbjct: 35 KVCRGLRTAVNKFEFNVGKITFNLFLDKVSMELEET 70
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,312,412
Number of Sequences: 27780
Number of extensions: 323981
Number of successful extensions: 762
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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