Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0542
         (671 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    25   0.87 
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    25   0.87 
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   2.6  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.5  

>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 24.6 bits (51), Expect = 0.87
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +1

Query: 328 CKCQCNRKWNTLK 366
           CKC C R+ NTL+
Sbjct: 78  CKCFCKRRTNTLR 90


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 24.6 bits (51), Expect = 0.87
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +1

Query: 328 CKCQCNRKWNTLK 366
           CKC C R+ NTL+
Sbjct: 526 CKCFCKRRTNTLR 538


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -1

Query: 668 WYHINLLIQFAITLK 624
           W H++ L++FA+ LK
Sbjct: 864 WGHLSTLVEFALELK 878


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +1

Query: 328 CKCQCNRKWNT 360
           CKC  +R WNT
Sbjct: 765 CKCYNDRTWNT 775


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,721
Number of Sequences: 438
Number of extensions: 4280
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)