Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0542
(671 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g35940.1 68414.m04463 AT hook motif-containing protein-relate... 115 3e-26
At3g30560.1 68416.m03867 hypothetical protein 113 8e-26
At3g42100.1 68416.m04322 AT hook motif-containing protein-relate... 111 5e-25
At3g31980.1 68416.m04050 hypothetical protein low similarity to ... 109 1e-24
At1g54430.1 68414.m06209 hypothetical protein 109 1e-24
At5g34960.1 68418.m04125 hypothetical protein includes At5g34960... 108 3e-24
At3g30420.1 68416.m03847 hypothetical protein low similarity to ... 108 4e-24
At3g13250.1 68416.m01668 hypothetical protein low similarity to ... 107 5e-24
At4g03916.1 68417.m00552 hypothetical protein low similarity to ... 106 1e-23
At1g64410.1 68414.m07301 hypothetical protein 106 2e-23
At1g52960.1 68414.m05990 hypothetical protein very low similarit... 106 2e-23
At3g51700.1 68416.m05669 expressed protein 103 1e-22
At5g37110.1 68418.m04454 hypothetical protein 99 1e-21
At5g28780.1 68418.m03538 hypothetical protein various predicted ... 94 7e-20
At3g43350.1 68416.m04582 helicase-related low similarity to SP|Q... 89 2e-18
At4g03690.1 68417.m00504 hypothetical protein very low similarit... 86 2e-17
At5g32070.1 68418.m03689 hypothetical protein 85 5e-17
At3g51690.1 68416.m05668 hypothetical protein low similarity to ... 71 5e-13
At2g05080.1 68415.m00530 hypothetical protein low similarity to ... 37 0.014
At1g78570.1 68414.m09157 NAD-dependent epimerase/dehydratase fam... 30 1.6
At1g53500.1 68414.m06066 NAD-dependent epimerase/dehydratase fam... 30 1.6
At2g39100.1 68415.m04804 zinc finger (C3HC4-type RING finger) fa... 29 2.8
At3g14790.1 68416.m01869 NAD-dependent epimerase/dehydratase fam... 28 4.9
At4g17130.1 68417.m02579 hypothetical protein 28 6.5
At2g03150.1 68415.m00268 ATP/GTP-binding protein family contains... 27 8.6
>At1g35940.1 68414.m04463 AT hook motif-containing protein-related
very low similarity to SP|Q9UUA2 DNA repair and
recombination protein pif1, mitochondrial precursor
{Schizosaccharomyces pombe}; contains weak hit to
PF02178: AT hook motif
Length = 1678
Score = 115 bits (276), Expect = 3e-26
Identities = 71/168 (42%), Positives = 99/168 (58%), Gaps = 9/168 (5%)
Frame = -3
Query: 660 YKSIDTVCD-NTEAVNFPT---EFLNSLDLPGMPPHNLQLKV-EXXXXXXXXXXXXXXXN 496
Y S D++ +++++N P +FLNS+ LPG+P H+L LKV N
Sbjct: 1492 YLSADSIDPTDSDSLNNPVITPDFLNSIKLPGLPNHSLCLKVGAPVMLLRNLDPKGGLCN 1551
Query: 495 GTRLVIKKIMKKVNEGTILNGKFRGENILIPRIPIIPTDVPIQFK--RIPFPITLAFAMT 322
GTRL I ++ ++ E ++ G G +LIP + + PTD + FK R FP+++AFAMT
Sbjct: 1552 GTRLQITQLCTQIVEAKVITGDRIGNIVLIPTVNLTPTDTKLPFKMRRRQFPLSVAFAMT 1611
Query: 321 INKSQGQTMSVCGLDLSTPCFSHGQLYVACSRV--GKPSSLFVLAKDG 184
INKSQGQ++ GL L P FSHGQLYVA SRV K + +L KDG
Sbjct: 1612 INKSQGQSLEHIGLYLPKPVFSHGQLYVALSRVTSKKGLKILILDKDG 1659
>At3g30560.1 68416.m03867 hypothetical protein
Length = 1473
Score = 113 bits (273), Expect = 8e-26
Identities = 70/169 (41%), Positives = 96/169 (56%), Gaps = 7/169 (4%)
Frame = -3
Query: 660 YKSIDTVC-DNTEAVNFPT---EFLNSLDLPGMPPHNLQLKVEXXXXXXXXXXXXXXXN- 496
Y+S D++ +T A P +FLN + + G+P H L LKV
Sbjct: 1288 YRSSDSIDPSDTRADKNPVYTPDFLNKIKISGLPNHLLWLKVGCPVMLLRNLDSHGGLMN 1347
Query: 495 GTRLVIKKIMKKVNEGTILNGKFRGENILIPRIPIIPTD--VPIQFKRIPFPITLAFAMT 322
GTRL I ++ K+ +G IL G G+ ++IPR+P+ P+D +P + KR FP+++AFAMT
Sbjct: 1348 GTRLQIVRLGDKLVQGRILTGTRVGKLVIIPRMPLTPSDRRLPFKMKRRQFPLSVAFAMT 1407
Query: 321 INKSQGQTMSVCGLDLSTPCFSHGQLYVACSRVGKPSSLFVLAKDGLTK 175
INKSQGQ++ G+ L P FSHGQLYVA SRV L VL D K
Sbjct: 1408 INKSQGQSLGNVGIYLPKPVFSHGQLYVAMSRVKSKGGLKVLITDSKGK 1456
>At3g42100.1 68416.m04322 AT hook motif-containing protein-related
very low similarity to SP|Q9UUA2 DNA repair and
recombination protein pif1, mitochondrial precursor
{Schizosaccharomyces pombe}; weak hit to Pfam profile
PF02178: AT hook motif
Length = 1752
Score = 111 bits (266), Expect = 5e-25
Identities = 72/167 (43%), Positives = 95/167 (56%), Gaps = 6/167 (3%)
Frame = -3
Query: 666 VSYKSID-TVCDNTEAVNFPTEFLNSLDLPGMPPHNLQLKV-EXXXXXXXXXXXXXXXNG 493
+S SID T D+ +FLNS+ L GMP H L+LKV NG
Sbjct: 1567 LSADSIDPTDSDSLANPVITPDFLNSIQLTGMPHHALRLKVGAPVMLLRNLDPKGGLCNG 1626
Query: 492 TRLVIKKIMKKVNEGTILNGKFRGENILIPRIPIIPTDVPIQFK--RIPFPITLAFAMTI 319
TRL I ++ K+V + ++ G+ +LIP I + P+D + FK R FP+++AFAMTI
Sbjct: 1627 TRLQITQLAKQVVQAKVITRDRIGDIVLIPLINLTPSDTKLPFKMRRRQFPLSVAFAMTI 1686
Query: 318 NKSQGQTMSVCGLDLSTPCFSHGQLYVACSRV--GKPSSLFVLAKDG 184
NKSQGQ++ GL L P FSHGQLYVA SRV K + +L KDG
Sbjct: 1687 NKSQGQSLEQVGLYLPKPVFSHGQLYVALSRVTSKKGLKILILDKDG 1733
>At3g31980.1 68416.m04050 hypothetical protein low similarity to
SP|P07271 DNA repair and recombination protein PIF1,
mitochondrial precursor {Saccharomyces cerevisiae}
Length = 1099
Score = 109 bits (263), Expect = 1e-24
Identities = 68/168 (40%), Positives = 94/168 (55%), Gaps = 7/168 (4%)
Frame = -3
Query: 669 LVSYKSIDTVCDNTEA-VNFPT---EFLNSLDLPGMPPHNLQLKV-EXXXXXXXXXXXXX 505
LV+Y S D++ A +N P +FLNS+ L G+P HNL LK+
Sbjct: 909 LVTYLSADSIDPQDAASLNNPVLTPDFLNSIKLSGLPNHNLTLKIGTPVMLLRNIDPKGG 968
Query: 504 XXNGTRLVIKKIMKKVNEGTILNGKFRGENILIPRIPIIPTD--VPIQFKRIPFPITLAF 331
NGTRL + ++ + E ++ G G+ ++I + I P+D +P + +R FPI +AF
Sbjct: 969 LCNGTRLQVTQMGNHILEARVITGDRVGDKVIIIKSQISPSDTKLPFRMRRRQFPIAVAF 1028
Query: 330 AMTINKSQGQTMSVCGLDLSTPCFSHGQLYVACSRVGKPSSLFVLAKD 187
AMTINKSQGQ++ G+ L P FSHGQLYVA SRV L VL D
Sbjct: 1029 AMTINKSQGQSLKEVGIYLPKPVFSHGQLYVALSRVTSKKGLKVLIVD 1076
>At1g54430.1 68414.m06209 hypothetical protein
Length = 1639
Score = 109 bits (263), Expect = 1e-24
Identities = 63/146 (43%), Positives = 84/146 (57%), Gaps = 4/146 (2%)
Frame = -3
Query: 621 VNFPTEFLNSLDLPGMPPHNLQLKVEXXXXXXXXXXXXXXXN-GTRLVIKKIMKKVNEGT 445
+++P E+LNSL+ PG+P H L LKV GTRL++ + KV +
Sbjct: 1463 MSYPMEYLNSLEFPGLPAHRLCLKVGVPIMLLRNLNQKEGLCNGTRLIVTHLGDKVLKAE 1522
Query: 444 ILNGKFRG-ENILIPRIPIIPTDV--PIQFKRIPFPITLAFAMTINKSQGQTMSVCGLDL 274
IL+ + + +LIPRI + P D P +R FP+ + +AMTINKSQGQT++ L L
Sbjct: 1523 ILSDTTKERKKVLIPRIILSPQDSKHPFTLRRRQFPVRMCYAMTINKSQGQTLNRVALYL 1582
Query: 273 STPCFSHGQLYVACSRVGKPSSLFVL 196
P FSHGQLYVA SRV P L VL
Sbjct: 1583 PKPVFSHGQLYVALSRVTSPKGLTVL 1608
>At5g34960.1 68418.m04125 hypothetical protein includes At5g34960,
At2g14450, At1g35920
Length = 1033
Score = 108 bits (260), Expect = 3e-24
Identities = 67/168 (39%), Positives = 94/168 (55%), Gaps = 9/168 (5%)
Frame = -3
Query: 660 YKSIDTVCD-NTEAVNFPT---EFLNSLDLPGMPPHNLQLKVEXXXXXXXXXXXXXXXN- 496
Y S D++ ++ ++N P +FLNS+ L G+P H+L+LKV
Sbjct: 847 YLSADSIDPTDSNSLNNPVITPDFLNSIKLAGLPNHSLRLKVSAPVMLLRNLDPKGGLCN 906
Query: 495 GTRLVIKKIMKKVNEGTILNGKFRGENILIPRIPIIPTDVPIQFK--RIPFPITLAFAMT 322
GTRL I ++ ++ E ++ G G +LIP + + PTD + FK R FP+++AFAMT
Sbjct: 907 GTRLQITQLCTQIVEAKVITGDIIGHIVLIPTVNLTPTDTKLPFKMRRRQFPLSVAFAMT 966
Query: 321 INKSQGQTMSVCGLDLSTPCFSHGQLYVACSRVGKPSSL--FVLAKDG 184
IN SQGQ++ GL L FSHGQLYVA SRV L +L KDG
Sbjct: 967 INTSQGQSLEHVGLYLPKAVFSHGQLYVALSRVTSKKGLKFLILDKDG 1014
>At3g30420.1 68416.m03847 hypothetical protein low similarity to
SP|Q9UUA2 DNA repair and recombination protein pif1,
mitochondrial precursor {Schizosaccharomyces pombe}
Length = 837
Score = 108 bits (259), Expect = 4e-24
Identities = 62/146 (42%), Positives = 83/146 (56%), Gaps = 4/146 (2%)
Frame = -3
Query: 621 VNFPTEFLNSLDLPGMPPHNLQLKVEXXXXXXXXXXXXXXXN-GTRLVIKKIMKKVNEGT 445
+++P E+LNSL+ PG+P H L LKV GTRL + + KV +
Sbjct: 661 MSYPMEYLNSLEFPGLPAHRLCLKVGVPIMLLRNLNQKEGLCNGTRLTVTHLGDKVLKAE 720
Query: 444 ILNGKFRG-ENILIPRIPIIPTDV--PIQFKRIPFPITLAFAMTINKSQGQTMSVCGLDL 274
IL+ + + +LIPRI + P D P +R FP+ + +AMT+NKSQGQT++ L L
Sbjct: 721 ILSDTTKKRKKVLIPRIILSPQDSKHPFTLRRRQFPVRMCYAMTVNKSQGQTLNRVALYL 780
Query: 273 STPCFSHGQLYVACSRVGKPSSLFVL 196
P FSHGQLYVA SRV P L VL
Sbjct: 781 PKPVFSHGQLYVALSRVTSPKGLTVL 806
>At3g13250.1 68416.m01668 hypothetical protein low similarity to
SP|P07271 DNA repair and recombination protein PIF1,
mitochondrial precursor {Saccharomyces cerevisiae}
Length = 1419
Score = 107 bits (258), Expect = 5e-24
Identities = 62/143 (43%), Positives = 83/143 (58%), Gaps = 3/143 (2%)
Frame = -3
Query: 606 EFLNSLDLPGMPPHNLQLKV-EXXXXXXXXXXXXXXXNGTRLVIKKIMKKVNEGTILNGK 430
+FLNS+ + GMP H+L+LKV NGTRL I ++ + E ++ G
Sbjct: 1256 DFLNSIKVSGMPHHSLRLKVGAPVMLLRNLDPKGGLCNGTRLQITQLCSHIVEAKVITGD 1315
Query: 429 FRGENILIPRIPIIPTDVPIQFK--RIPFPITLAFAMTINKSQGQTMSVCGLDLSTPCFS 256
G+ + IP I I P+D + FK R FP+++AF MTINKSQGQ++ GL L P FS
Sbjct: 1316 RIGQIVYIPLINITPSDTKLPFKMRRRQFPLSVAFVMTINKSQGQSLEQVGLYLPKPVFS 1375
Query: 255 HGQLYVACSRVGKPSSLFVLAKD 187
HGQLYVA SRV + L +L D
Sbjct: 1376 HGQLYVALSRVTSKTGLKILILD 1398
>At4g03916.1 68417.m00552 hypothetical protein low similarity to
SP|P07271 DNA repair and recombination protein PIF1,
mitochondrial precursor {Saccharomyces cerevisiae}
Length = 251
Score = 106 bits (255), Expect = 1e-23
Identities = 67/167 (40%), Positives = 91/167 (54%), Gaps = 7/167 (4%)
Frame = -3
Query: 666 VSYKSIDTV--CDNTEAVN--FPTEFLNSLDLPGMPPHNLQLKV-EXXXXXXXXXXXXXX 502
+ Y SID++ D T N F +FLNS+ + G+P H L+L +
Sbjct: 85 IQYLSIDSIDLSDTTSEYNPVFTPDFLNSIKISGLPNHCLRLNIGAPIMLLRNLDPKGGL 144
Query: 501 XNGTRLVIKKIMKKVNEGTILNGKFRGENILIPRIPIIPTD--VPIQFKRIPFPITLAFA 328
NGTRL + ++ + + I+ G G+ +LI +I I P+D +P +R FPI +AFA
Sbjct: 145 CNGTRLQMIQMTPPILQAVIITGGRIGDKVLISKILITPSDTKLPFNMRRKQFPIVVAFA 204
Query: 327 MTINKSQGQTMSVCGLDLSTPCFSHGQLYVACSRVGKPSSLFVLAKD 187
MTINKSQGQ++ GL L P FSH QLYVA SRV L VL D
Sbjct: 205 MTINKSQGQSLKEIGLYLPRPVFSHDQLYVALSRVTSKKGLKVLIVD 251
>At1g64410.1 68414.m07301 hypothetical protein
Length = 1231
Score = 106 bits (254), Expect = 2e-23
Identities = 62/145 (42%), Positives = 85/145 (58%), Gaps = 3/145 (2%)
Frame = -3
Query: 648 DTVCDNTEAVNFPTEFLNSLDLPGMPPHNLQLKVEXXXXXXXXXXXXXXXN-GTRLVIKK 472
DT N +A + +FLNS+ + G+P H L+LKV GTRL + +
Sbjct: 1061 DTSSANNDA--YSADFLNSVRVSGLPNHCLRLKVGCPIMLLRNMDPNKGLCNGTRLQVTQ 1118
Query: 471 IMKKVNEGTILNGKFRGENILIPRIPIIPTD--VPIQFKRIPFPITLAFAMTINKSQGQT 298
+ V + + G G+ +LIPR+ I P+D +P + +R FP+++AFAMTINKSQGQT
Sbjct: 1119 MADTVIQARFITGNRVGKIVLIPRMLITPSDTRLPFKMRRRQFPLSVAFAMTINKSQGQT 1178
Query: 297 MSVCGLDLSTPCFSHGQLYVACSRV 223
+ GL L P FSHGQLYVA SRV
Sbjct: 1179 LESVGLYLPRPVFSHGQLYVAISRV 1203
>At1g52960.1 68414.m05990 hypothetical protein very low similarity to
SP|Q9UUA2 DNA repair and recombination protein pif1,
mitochondrial precursor {Schizosaccharomyces pombe}
Length = 996
Score = 106 bits (254), Expect = 2e-23
Identities = 62/145 (42%), Positives = 85/145 (58%), Gaps = 3/145 (2%)
Frame = -3
Query: 648 DTVCDNTEAVNFPTEFLNSLDLPGMPPHNLQLKVEXXXXXXXXXXXXXXXN-GTRLVIKK 472
DT N +A + +FLNS+ + G+P H L+LKV GTRL + +
Sbjct: 845 DTSSANNDA--YSADFLNSVRVSGLPNHCLRLKVGCPVMLLRNMDPNKGLCNGTRLQVTQ 902
Query: 471 IMKKVNEGTILNGKFRGENILIPRIPIIPTD--VPIQFKRIPFPITLAFAMTINKSQGQT 298
+ V + + G G+ +LIPR+ I P+D +P + +R FP+++AFAMTINKSQGQT
Sbjct: 903 MADTVIQARFITGNRVGKIVLIPRMLITPSDTRLPFKMRRRQFPLSVAFAMTINKSQGQT 962
Query: 297 MSVCGLDLSTPCFSHGQLYVACSRV 223
+ GL L P FSHGQLYVA SRV
Sbjct: 963 LESVGLYLPRPVFSHGQLYVAISRV 987
>At3g51700.1 68416.m05669 expressed protein
Length = 344
Score = 103 bits (246), Expect = 1e-22
Identities = 67/160 (41%), Positives = 86/160 (53%), Gaps = 10/160 (6%)
Frame = -3
Query: 615 FPTEFLNSLDLPGMPPHNLQLKV-EXXXXXXXXXXXXXXXNGTRLVIKKIMKKVNEGTIL 439
+P EFLNS+ +PG P L+LKV GTRL I ++ V E I+
Sbjct: 168 YPLEFLNSIKIPGFPDFKLRLKVGAPVMLLRDLAPYGWLRKGTRLQITRVETFVLEAMII 227
Query: 438 NGKFRGENILIPRIP--IIPTDVPIQFKRIPFPITLAFAMTINKSQGQTMSVCGLDLSTP 265
G GE +LIPRIP + PI+ +R FP+ LAFAMTI++SQ QT+S G+ L
Sbjct: 228 TGNNHGEKVLIPRIPSDLREAKFPIKMRRRQFPVKLAFAMTIDESQRQTLSKVGIYLPRQ 287
Query: 264 CFSHGQLYVACSRVGKPSSLFVLA--KDGL-----TKNIV 166
HGQ YVA S+V + L VL KDG TKN+V
Sbjct: 288 LLFHGQRYVAISKVKSRAGLKVLITDKDGKPDQEETKNVV 327
>At5g37110.1 68418.m04454 hypothetical protein
Length = 1307
Score = 99 bits (238), Expect = 1e-21
Identities = 55/137 (40%), Positives = 78/137 (56%), Gaps = 3/137 (2%)
Frame = -3
Query: 606 EFLNSLDLPGMPPHNLQLKVEXXXXXXXXXXXXXXXN-GTRLVIKKIMKKVNEGTILNGK 430
+FLNS+ + +P H L+LK+ GTRL I ++ + + IL G
Sbjct: 1154 DFLNSVKVSRLPNHKLRLKIGCPVMLLRNIDPIGGLMNGTRLRITQMGPFILQAMILTGD 1213
Query: 429 FRGENILIPRIPIIPTD--VPIQFKRIPFPITLAFAMTINKSQGQTMSVCGLDLSTPCFS 256
G +LIPR+ + P+D +P + +R P+ + FAMTINKSQGQ++ G+ L PCFS
Sbjct: 1214 RAGHLVLIPRLKLAPSDTKLPFRMRRTQLPLAVCFAMTINKSQGQSLKRVGIFLLRPCFS 1273
Query: 255 HGQLYVACSRVGKPSSL 205
HGQLYVA SRV + L
Sbjct: 1274 HGQLYVAISRVTSKTRL 1290
>At5g28780.1 68418.m03538 hypothetical protein various predicted
proteins, Arabidopsis thaliana
Length = 337
Score = 94.3 bits (224), Expect = 7e-20
Identities = 61/175 (34%), Positives = 91/175 (52%), Gaps = 7/175 (4%)
Frame = -3
Query: 648 DTVCDNTEAVNFPTEFLNSLDLPGMPPHNLQLKVEXXXXXXXXXXXXXXXN-GTRLVIKK 472
DT+ + EA+ + ++LNSL+ P +P H + LK GTRL++
Sbjct: 156 DTIGADYEAL-YHVKYLNSLEFPSLPKHKISLKKGVPIMQMRNFNQKEGLCNGTRLIVTN 214
Query: 471 IMKKVNEGTILNGKFRGENILIPRIPIIP--TDVPIQFKRIPFPITLAFAMTINKSQGQT 298
+ ++V E I+ G G+ + IPR + P ++ P +R FP+ + +AMTI K+QGQ+
Sbjct: 215 LGEQVIEAQIVTGTHAGKMVSIPRFILSPPQSEHPFTLRRQQFPMRVCYAMTIIKNQGQS 274
Query: 297 MSVCGLDLSTPCFSHGQLYVACSRVGKPSSLFVL----AKDGLTKNIVHAAALKD 145
+ L L P FSH QLYVA SRV P L +L K+ KNIV+ D
Sbjct: 275 LKSDVLYLPNPVFSHVQLYVALSRVTSPIGLTILHGDDQKNDEVKNIVYKEFYND 329
>At3g43350.1 68416.m04582 helicase-related low similarity to
SP|Q9UUA2 DNA repair and recombination protein pif1,
mitochondrial precursor {Schizosaccharomyces pombe}
Length = 830
Score = 89.0 bits (211), Expect = 2e-18
Identities = 46/93 (49%), Positives = 62/93 (66%), Gaps = 2/93 (2%)
Frame = -3
Query: 495 GTRLVIKKIMKKVNEGTILNGKFRGENILIPRIPIIPTD--VPIQFKRIPFPITLAFAMT 322
GTRL + ++ V + + G G+ +LIPR+ I P+D +P + +R F +++AFAMT
Sbjct: 613 GTRLQVTQMADTVIQARFITGNRVGKIVLIPRMLITPSDTRLPFKMRRKQFALSVAFAMT 672
Query: 321 INKSQGQTMSVCGLDLSTPCFSHGQLYVACSRV 223
INKSQGQT+ GL L P FSHGQLYVA SRV
Sbjct: 673 INKSQGQTLESVGLYLPRPVFSHGQLYVAISRV 705
Score = 88.2 bits (209), Expect = 4e-18
Identities = 46/93 (49%), Positives = 61/93 (65%), Gaps = 2/93 (2%)
Frame = -3
Query: 495 GTRLVIKKIMKKVNEGTILNGKFRGENILIPRIPIIPTD--VPIQFKRIPFPITLAFAMT 322
GTRL + ++ V + + G G+ +LIPR+ I P D +P + +R F +++AFAMT
Sbjct: 729 GTRLQVTQMADTVIQARFITGNRVGKIVLIPRMLITPLDTRLPFKMRRKQFALSVAFAMT 788
Query: 321 INKSQGQTMSVCGLDLSTPCFSHGQLYVACSRV 223
INKSQGQT+ GL L P FSHGQLYVA SRV
Sbjct: 789 INKSQGQTLESVGLYLPRPVFSHGQLYVAISRV 821
Score = 59.7 bits (138), Expect = 2e-09
Identities = 29/38 (76%), Positives = 30/38 (78%)
Frame = -3
Query: 336 AFAMTINKSQGQTMSVCGLDLSTPCFSHGQLYVACSRV 223
AFAMTINKSQGQT+ GL L P FSHGQLYVA SRV
Sbjct: 552 AFAMTINKSQGQTLESVGLYLPRPVFSHGQLYVAISRV 589
>At4g03690.1 68417.m00504 hypothetical protein very low similarity
to SP|Q9UUA2 DNA repair and recombination protein pif1,
mitochondrial precursor {Schizosaccharomyces pombe}
Length = 570
Score = 86.2 bits (204), Expect = 2e-17
Identities = 48/109 (44%), Positives = 69/109 (63%), Gaps = 2/109 (1%)
Frame = -3
Query: 495 GTRLVIKKIMKKVNEGTILNGKFRGENILIPRIPIIPTD--VPIQFKRIPFPITLAFAMT 322
GTRL I ++ K+ +G L G G+ +LI +P+ P+ +P + +R FP+++AFAM
Sbjct: 444 GTRLQIVRLGDKLVQGRPLTGTRVGKLVLILMMPLTPSAHRLPFKMRRKQFPLSVAFAMM 503
Query: 321 INKSQGQTMSVCGLDLSTPCFSHGQLYVACSRVGKPSSLFVLAKDGLTK 175
INKSQ Q+++ G++L P FSHGQLYVA SRV + L VL D K
Sbjct: 504 INKSQRQSLANVGINLLKPVFSHGQLYVAMSRVKSKARLKVLITDSKGK 552
>At5g32070.1 68418.m03689 hypothetical protein
Length = 339
Score = 84.6 bits (200), Expect = 5e-17
Identities = 64/166 (38%), Positives = 90/166 (54%), Gaps = 5/166 (3%)
Frame = -3
Query: 666 VSYKSIDTVCDNTEAVNFPT-EFLNSLDLPGMPPHNLQLKVEXXXXXXXXXXXXXXXNGT 490
+S SID ++ A + T +FLNS+ L G+ H L LKV G
Sbjct: 163 LSADSIDPTDSDSLANSVITPDFLNSIKLSGLAHHALCLKV-----------------GA 205
Query: 489 RLVIKKIMKKVNEGTILNGKFRGENILIPRIPIIPTDVPIQFK--RIPFPITLAFAMTIN 316
++ K+V + ++ G GE +LIP I + P+D+ + FK R F +++AFA+TIN
Sbjct: 206 PATKTQLTKQVVQVRVITGDRIGEIVLIPLINLTPSDMKLPFKMRRRQFSLSVAFAITIN 265
Query: 315 KSQGQTMSVCGLDLSTPCFSHGQLYVACSRV--GKPSSLFVLAKDG 184
KSQGQ++ GL L P FS GQLYVA SRV K + +L KDG
Sbjct: 266 KSQGQSLEQVGLYLPKPVFSLGQLYVALSRVTSKKGLKILILDKDG 311
>At3g51690.1 68416.m05668 hypothetical protein low similarity to
SP|P07271 DNA repair and recombination protein PIF1,
mitochondrial precursor {Saccharomyces cerevisiae}
Length = 374
Score = 71.3 bits (167), Expect = 5e-13
Identities = 53/145 (36%), Positives = 75/145 (51%), Gaps = 3/145 (2%)
Frame = -3
Query: 612 PTEFLNSLDLPGMPPHNLQLKVEXXXXXXXXXXXXXXXNGTRLVIKKIMKKVNEGTILNG 433
P E LNS+ +PG+P L+LKV G +++ + + G
Sbjct: 165 PLEVLNSIKVPGLPDFKLRLKV-----------------GAPVMLLRDLDPSR------G 201
Query: 432 KFRGENILIPRIPIIPTDV--PIQFKRIPFPITLAFAMTINKSQGQTMSVCGLDLSTPCF 259
G+ I IPRI PT+ P+Q +R +P+ LAFAMTI++SQ T+S GL L F
Sbjct: 202 NKHGKKIWIPRIASYPTETNFPLQMRRTQYPLKLAFAMTIDESQVHTLSKVGLYLPRQVF 261
Query: 258 SHG-QLYVACSRVGKPSSLFVLAKD 187
SHG Q++VA S+V + L VL D
Sbjct: 262 SHGRQMFVAISKVKSRAGLKVLITD 286
Score = 49.6 bits (113), Expect = 2e-06
Identities = 27/57 (47%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
Frame = -3
Query: 351 FPITLAFAMTINKSQGQTMSVCGLDLSTPCFSHGQLYVACSRV--GKPSSLFVLAKD 187
+P TLAFAMTI++S+GQT S GL L F GQ Y+A S+V G + F++A++
Sbjct: 298 YPFTLAFAMTIDQSRGQTFSKVGLYLPKQVFFPGQRYLAISKVKAGTGLTQFLIAEE 354
>At2g05080.1 68415.m00530 hypothetical protein low similarity to
SP|Q9UUA2 DNA repair and recombination protein pif1,
mitochondrial precursor {Schizosaccharomyces pombe}
Length = 1238
Score = 36.7 bits (81), Expect = 0.014
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Frame = -3
Query: 606 EFLNSLDLPGMPPHNLQLKV-EXXXXXXXXXXXXXXXNGTRLVIKKIMKKVNEGTILNGK 430
EFLN++ + G+ H L+LK+ NGTRL I ++ + + IL G
Sbjct: 1167 EFLNNVKVLGLSNHKLRLKIGSPVMLLRNIDPIGGLMNGTRLQIMQMSPFILQAMILTGD 1226
Query: 429 FRGENILIPRI 397
G+ +LIPR+
Sbjct: 1227 RAGQLVLIPRL 1237
>At1g78570.1 68414.m09157 NAD-dependent epimerase/dehydratase family
protein similar to dTDP-glucose 4,6-dehydratase from
Aneurinibacillus thermoaerophilus GI:16357461, RmlB from
Leptospira borgpetersenii GI:4234803; contains Pfam
profile PF01370 NAD dependent epimerase/dehydratase
family
Length = 669
Score = 29.9 bits (64), Expect = 1.6
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +2
Query: 374 GTSVG--IIGIRGINIFSPRNLPFKMVPSLTFFIIFLMTNRVPLLSRGGFKLRS 529
G S G +I RG N++ P P K++P FI+ M +V + G +RS
Sbjct: 174 GRSYGLPVITTRGNNVYGPNQFPEKLIPK---FILLAMRGQVLPIHGDGSNVRS 224
>At1g53500.1 68414.m06066 NAD-dependent epimerase/dehydratase family
protein low similarity to dTDP-D-glucose-4,6-dehydratase
from Aneurinibacillus thermoaerophilus GI:16357461,
Sphingomonas sp. GI:1314581; contains Pfam profile
PF01370: NAD dependent epimerase/dehydratase family;
putative NDP-rhamnose synthase (rhm2 gene) GI:31559258
Length = 667
Score = 29.9 bits (64), Expect = 1.6
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +2
Query: 374 GTSVG--IIGIRGINIFSPRNLPFKMVPSLTFFIIFLMTNRVPLLSRGGFKLRS 529
G S G +I RG N++ P P KM+P FI+ M+ + + G +RS
Sbjct: 176 GRSYGLPVITTRGNNVYGPNQFPEKMIPK---FILLAMSGKPLPIHGDGSNVRS 226
>At2g39100.1 68415.m04804 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 296
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +1
Query: 286 TNRHCLALGFINSHCKC-QCNRKWNTLKLNWHICGYNRYSWY 408
T R A+ + H C C RKW++ K N +C SW+
Sbjct: 47 TERRSAAVITVCKHGYCLACIRKWSSFKRNCPLCNTRFDSWF 88
>At3g14790.1 68416.m01869 NAD-dependent epimerase/dehydratase family
protein similar to dTDP-glucose 4,6-dehydratase from
Aneurinibacillus thermoaerophilus GI:16357461,
Saccharopolyspora spinosa GI:15077647, RmlB from
Leptospira borgpetersenii GI:4234803; contains Pfam
profile PF01370 NAD dependent epimerase/dehydratase
family
Length = 664
Score = 28.3 bits (60), Expect = 4.9
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +2
Query: 374 GTSVG--IIGIRGINIFSPRNLPFKMVPSLTFFIIFLMTNRVPLLSRGGFKLRS 529
G S G +I RG N++ P P K++P FI+ M + + G +RS
Sbjct: 174 GRSYGLPVITTRGNNVYGPNQFPEKLIPK---FILLAMNGKPLPIHGDGSNVRS 224
>At4g17130.1 68417.m02579 hypothetical protein
Length = 747
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -3
Query: 261 FSHGQLYVACSRVGKPSSLFVLAKDGLTKNIVHAAALKD 145
F +GQ+ +C +G SS V +DG+ + H A +D
Sbjct: 338 FKNGQVLDSCISLGACSSYSVSREDGVELEVYHKAPQQD 376
>At2g03150.1 68415.m00268 ATP/GTP-binding protein family contains
ATP/GTP-binding site motif A (P-loop), PROSITE:PS00017
Length = 1340
Score = 27.5 bits (58), Expect = 8.6
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Frame = -3
Query: 495 GTRLVIKKIMKKVNEGTILNGK---FRGENILIPRIPIIP-TDVP 373
GT+ +KKI+K+V + + +GK +GE +P IP T VP
Sbjct: 745 GTKKTVKKIIKRVVKRPVNDGKATGMKGEKSDVPEHVAIPETTVP 789
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,065,852
Number of Sequences: 28952
Number of extensions: 286155
Number of successful extensions: 695
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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