Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0540
         (774 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25B8.01 |dap1|SPAC26H5.15|cytochrome P450 regulator Dap1|Sch...    27   3.9  
SPBC800.10c |||EPS15 repeat family actin cortical patch componen...    27   3.9  
SPAC1782.02c |||conserved fungal protein|Schizosaccharomyces pom...    27   3.9  

>SPAC25B8.01 |dap1|SPAC26H5.15|cytochrome P450 regulator
           Dap1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 166

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = +1

Query: 295 IFV*LDITPWRRTNKKNVIAS 357
           +F+ L IT WRR N+K+ IAS
Sbjct: 12  LFLYLLITRWRRKNEKSFIAS 32


>SPBC800.10c |||EPS15 repeat family actin cortical patch component
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1116

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = -1

Query: 756 PCKQTSAQPTDGEWLPSPMDFSNARGRAKPL 664
           P + TSA+P +    P+P + +N +   +P+
Sbjct: 876 PVENTSAEPIENTSAPTPFEIANKQQATEPI 906


>SPAC1782.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 161

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -3

Query: 610 FLSQSVLFCILLLQNNVDFTSARGPVRLIFFSVVAIF 500
           FL   +++ I LLQ+N  F S   P+R IF  ++  F
Sbjct: 65  FLILGMIYTISLLQSNFLFFSGITPIRAIFDFILTGF 101


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,952,851
Number of Sequences: 5004
Number of extensions: 59346
Number of successful extensions: 126
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)