Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0540
         (774 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB043821-1|BAB12247.1|  620|Homo sapiens platelet glycoprotein V...    34   0.65 

>AB043821-1|BAB12247.1|  620|Homo sapiens platelet glycoprotein VI-3
           protein.
          Length = 620

 Score = 33.9 bits (74), Expect = 0.65
 Identities = 31/86 (36%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
 Frame = +2

Query: 104 FSNLTSCKVAKMS*NHTLTIRHSWS*KICLHGLLSRDRCGI--SFGVSTILLKQRSGNF- 274
           F  L SC V   + +H  +I H       L  LLS  R G+  S G+S I L  +     
Sbjct: 477 FGPLCSCLVFPRN-SHPHSISHCG-----LTNLLSSLRTGLAGSLGMSFIFLSVKLARCP 530

Query: 275 --FNYYPKIFLCNLILPHGEEQTKKT 346
             F    KI LCN++ PH  +Q KKT
Sbjct: 531 LPFTLENKISLCNMVKPHLYQQNKKT 556


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,877,229
Number of Sequences: 237096
Number of extensions: 2025662
Number of successful extensions: 2925
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2925
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9367263024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)