Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0540
         (774 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              25   1.0  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   7.3  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   7.3  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   9.6  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   9.6  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
 Frame = -2

Query: 248 VLWRRQK---KSHNDPEIRVHGDKSFKTTNV 165
           ++WRR     ++ N+PEIRV  D S   T V
Sbjct: 342 LVWRRNGADLETLNEPEIRVFNDGSLYLTKV 372


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -3

Query: 592 LFCILLLQNNVDFTSARGPVRLIFF 518
           LFC+L +Q  + F   + P  ++F+
Sbjct: 286 LFCLLDVQWRIPFNGIQMPNLMVFY 310


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +2

Query: 212 DRCGISFGVSTILLKQRSGNFFNYYPKIFLCNLILPHGEEQTKKT 346
           D CG SFG + +L   +     +Y  K++ C L   H    +KKT
Sbjct: 235 DICGKSFGYNHVL---KLHQVAHYGEKVYKCTLC--HETFGSKKT 274


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = -2

Query: 359 KEAITFFLFVLRHGVI 312
           KEA+  F+ +L+HG++
Sbjct: 74  KEAVNEFMQLLKHGML 89


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = -2

Query: 359 KEAITFFLFVLRHGVI 312
           KEA+  F+ +L+HG++
Sbjct: 74  KEAVNEFMQLLKHGML 89


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,823
Number of Sequences: 438
Number of extensions: 4047
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)