Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0540
         (774 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g56160.1 68416.m06242 expressed protein                             32   0.49 
At2g48050.1 68415.m06014 expressed protein ; expression supporte...    29   4.5  

>At3g56160.1 68416.m06242 expressed protein 
          Length = 436

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 16/42 (38%), Positives = 26/42 (61%)
 Frame = +2

Query: 611 LNMSCQKVSF*KLVFSGTSGLALPLALLKSMGDGNHSPSVGC 736
           ++ S Q++ F K + S  S   LPLAL+  +G G  +P++GC
Sbjct: 88  ISASAQRLYFGKELLSFASDNFLPLALVSGVGLGFANPTLGC 129


>At2g48050.1 68415.m06014 expressed protein ; expression supported by
            MPSS
          Length = 1500

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = -1

Query: 774  FFFFFLPCKQTSAQPTDGEWLPSPMDFS---NARGRAKPLVPLK 652
            F  +     Q+S    DG+W+PS  DF+   NARG  K L  ++
Sbjct: 1093 FLIYIFTLIQSSITVKDGDWVPS-ADFTSRRNARGSQKDLTRIR 1135


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,109,238
Number of Sequences: 28952
Number of extensions: 294321
Number of successful extensions: 605
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1726528800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)