Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0539
(796 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 336 2e-93
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 280 2e-76
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 169 4e-43
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 149 6e-37
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 140 3e-34
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 134 2e-32
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 130 2e-31
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 128 9e-31
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 121 1e-28
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 119 4e-28
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 118 1e-27
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 118 1e-27
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 116 5e-27
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 114 2e-26
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 110 3e-25
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 106 3e-24
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 102 5e-23
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 100 5e-22
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 91 2e-19
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 85 8e-18
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 82 1e-16
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 81 2e-16
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 68 1e-12
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 44 3e-05
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 35 0.012
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex... 30 0.44
SPBC27.02c |ask1|mug181|DASH complex subunit Ask1|Schizosaccharo... 29 0.58
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S... 29 1.0
SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar... 28 1.8
SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p... 27 2.3
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha... 27 3.1
SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual 27 4.1
SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual 27 4.1
SPBC17G9.12c |||conserved fungal protein|Schizosaccharomyces pom... 27 4.1
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|... 26 5.4
SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein P... 26 5.4
SPAC4H3.13 |||transcription factor Pcc1 |Schizosaccharomyces pom... 26 7.1
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met... 26 7.1
SPAC5D6.08c |mes1||meiosis II protein Mes1|Schizosaccharomyces p... 26 7.1
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S... 25 9.4
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 25 9.4
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 336 bits (827), Expect = 2e-93
Identities = 155/214 (72%), Positives = 191/214 (89%)
Frame = +1
Query: 154 MDPGTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQ 333
++ ++T++D+V++TFDDMNLK ELLRGIYAYGFE+PSAIQQRAIMP + RDV+AQAQ
Sbjct: 5 LEDSVIETNYDEVIDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQ 64
Query: 334 SGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGG 513
SGTGKTATFSIS+LQ+IDTS+++CQALILAPTRELAQQIQKVV+ALGD +N +CHACIGG
Sbjct: 65 SGTGKTATFSISVLQKIDTSLKQCQALILAPTRELAQQIQKVVVALGDLMNVECHACIGG 124
Query: 514 TNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHD 693
T VR+D+ L++GVHVVVGTPGRV+DMI RRAL + +++FVLDEADEMLSRGFKDQI+D
Sbjct: 125 TLVRDDMAALQAGVHVVVGTPGRVHDMIQRRALPTDAVQMFVLDEADEMLSRGFKDQIYD 184
Query: 694 VFKMLSADVQVILLSATMPDDVLEVSRCFMRDPV 795
+F++L QV+LLSATMP DVLEV+ FMRDP+
Sbjct: 185 IFQLLPPTAQVVLLSATMPQDVLEVTTKFMRDPI 218
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 280 bits (686), Expect = 2e-76
Identities = 133/215 (61%), Positives = 170/215 (79%), Gaps = 1/215 (0%)
Frame = +1
Query: 154 MDPGTLDTDWD-QVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQA 330
M+ L T D V +F++MNLKE+LLRGIYAYG+E PSA+Q RAI+ +GRDVIAQA
Sbjct: 6 MENVELTTSEDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQA 65
Query: 331 QSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIG 510
QSGTGKTATFSI ILQ ID S+R+ QALIL+PTRELA QIQ VV+ALGDH+N +CHACIG
Sbjct: 66 QSGTGKTATFSIGILQSIDLSVRDTQALILSPTRELAVQIQNVVLALGDHMNVQCHACIG 125
Query: 511 GTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIH 690
GT+V DI++L+ G HVV GTPGRV DMI RR L +K+ +LDEADE+L++GFK+QI+
Sbjct: 126 GTSVGNDIKKLDYGQHVVSGTPGRVTDMIRRRNLRTRNVKMLILDEADELLNQGFKEQIY 185
Query: 691 DVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPV 795
D+++ L QV+++SAT+P DVLE++ F +PV
Sbjct: 186 DIYRYLPPGTQVVVVSATLPQDVLEMTNKFTTNPV 220
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 169 bits (411), Expect = 4e-43
Identities = 91/219 (41%), Positives = 127/219 (57%), Gaps = 4/219 (1%)
Frame = +1
Query: 106 KNGPSKDQGSYDGPPGMDPGTLDTDWDQVVET----FDDMNLKEELLRGIYAYGFEKPSA 273
+N D+ S+ G P + + V +T F+D LK ELL GI+ GFE+PS
Sbjct: 10 ENANLNDRESFKGQMKAQPVDMRPKTEDVTKTRGTEFEDYYLKRELLMGIFEAGFERPSP 69
Query: 274 IQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQ 453
IQ+ +I + GRD++A+A++GTGKTA F I L+++DT + Q LIL PTRELA Q
Sbjct: 70 IQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEKVDTKKSKIQTLILVPTRELALQTS 129
Query: 454 KVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKL 633
+V LG H+N K GGT +R+DI +L VH+VVGTPGRV D+ + +
Sbjct: 130 QVCKTLGKHMNVKVMVTTGGTTLRDDIIRLNDTVHIVVGTPGRVLDLAGKGVADFSECTT 189
Query: 634 FVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMP 750
FV+DEAD++LS F I + + Q+ L SAT P
Sbjct: 190 FVMDEADKLLSPEFTPIIEQLLSYFPKNRQISLYSATFP 228
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 149 bits (360), Expect = 6e-37
Identities = 80/200 (40%), Positives = 128/200 (64%), Gaps = 4/200 (2%)
Frame = +1
Query: 193 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQG--RDVIAQAQSGTGKTATFSI 366
V++F+++ LK ELL+GIY+ F+KPS IQ++A+ + R++I Q+QSGTGKTA F++
Sbjct: 113 VKSFEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFAL 172
Query: 367 SILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDI-RQL 543
++L ++D S+ + QA+ LAP+RELA+QI VV +G + K +++ + +
Sbjct: 173 TMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEVKT-----AFGIKDSVPKGA 227
Query: 544 ESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEML-SRGFKDQIHDVFKMLSADV 720
+ +V+GTPG V D++ RR L A IK+FVLDEAD ML +G DQ + +L +
Sbjct: 228 KIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNT 287
Query: 721 QVILLSATMPDDVLEVSRCF 780
Q++L SAT + V + + F
Sbjct: 288 QIVLFSATFSERVEKYAERF 307
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 140 bits (338), Expect = 3e-34
Identities = 79/203 (38%), Positives = 117/203 (57%), Gaps = 5/203 (2%)
Frame = +1
Query: 202 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 381
F D LK ELLR I GFE PS +QQ I I G DV+ QA+SG GKTA F +S LQQ
Sbjct: 53 FRDFLLKPELLRAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQ 112
Query: 382 IDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTNVREDI---RQLES 549
I+ E L+L TRELA QI+ +L + + GG N+++D+ +
Sbjct: 113 IEPVDGEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDMEAFKDKSK 172
Query: 550 GVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEML-SRGFKDQIHDVFKMLSADVQV 726
H+VV TPGR+ ++ + L N++K FVLDE D++L S + I +VF+ QV
Sbjct: 173 SPHIVVATPGRLNALVREKILKVNSVKHFVLDECDKLLESVDMRRDIQEVFRATPPQKQV 232
Query: 727 ILLSATMPDDVLEVSRCFMRDPV 795
++ SAT+ +++ + + FM++P+
Sbjct: 233 MMFSATLSNEIRPICKKFMQNPL 255
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 134 bits (323), Expect = 2e-32
Identities = 69/200 (34%), Positives = 113/200 (56%), Gaps = 2/200 (1%)
Frame = +1
Query: 202 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 381
F M L + LLR I+ GF+ P+ IQ++ I ++GRDV+ A++G+GKTA F I +++
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEH 130
Query: 382 IDTSIREC--QALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGV 555
+ +++ +ALIL+P RELA Q KVV + + A +GG ++ E L
Sbjct: 131 LKSTLANSNTRALILSPNRELALQTVKVVKDFSKGTDLRSVAIVGGVSLEEQFSLLSGKP 190
Query: 556 HVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILL 735
+VV TPGR + L ++I+ V DEAD + GF Q+ ++ L Q +L
Sbjct: 191 DIVVATPGRFLHLKVEMKLELSSIEYVVFDEADRLFEMGFAAQLTEILHALPTSRQTLLF 250
Query: 736 SATMPDDVLEVSRCFMRDPV 795
SAT+P +++ ++ ++DPV
Sbjct: 251 SATLPRTLVDFAKAGLQDPV 270
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 130 bits (315), Expect = 2e-31
Identities = 69/203 (33%), Positives = 110/203 (54%), Gaps = 4/203 (1%)
Frame = +1
Query: 199 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQ 378
+F MNL +L+G+ GFE P+ IQ + I + G+D++ A +G+GKTA F + IL+
Sbjct: 260 SFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILE 319
Query: 379 QI---DTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLES 549
++ + + LIL PTRELA Q V + + CIGG +++ ++L
Sbjct: 320 RLLYRPKKVPTTRVLILCPTRELAMQCHSVATKIASFTDIMVCLCIGGLSLKLQEQELRK 379
Query: 550 GVHVVVGTPGRVYD-MITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQV 726
+V+ TPGR D M + I++ V+DEAD ML GF D+++++ + Q
Sbjct: 380 RPDIVIATPGRFIDHMRNSQGFTVENIEIMVMDEADRMLEDGFADELNEIIQACPKSRQT 439
Query: 727 ILLSATMPDDVLEVSRCFMRDPV 795
+L SATM D V ++ R + PV
Sbjct: 440 MLFSATMTDKVDDLIRLSLNRPV 462
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 128 bits (309), Expect = 9e-31
Identities = 75/247 (30%), Positives = 127/247 (51%), Gaps = 1/247 (0%)
Frame = +1
Query: 58 MSYSSERRSEDWPEDSKNGPSKDQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELLR 237
M+ S ++ +ED S N + S + D+ ++ +TF ++ + +EL
Sbjct: 1 MAPSEKKLTEDKKNSSLNKKIETSNS-SSEKSSENNNGDSQNNEAPKTFKELGVIDELCE 59
Query: 238 GIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALI 417
GF+ P+ IQQ AI + RDVI AQ+G+GKTA F++ ++Q++ + A++
Sbjct: 60 ACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQELWNNPSPFFAVV 119
Query: 418 LAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMI 597
LAPTRELA QI + A+G + + +GG ++ L HV+V TPGR+ D +
Sbjct: 120 LAPTRELAYQISEQFEAIGGSIGVRSVVIVGGMDMVTQAVALSKKPHVLVCTPGRLMDHL 179
Query: 598 -TRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR 774
+ +K ++DEAD +L F I + K++ + + +L SATM V ++ R
Sbjct: 180 ENTKGFSLKNLKYLIMDEADRLLDMDFGPIIDKILKIIPHERRTLLFSATMTSKVEKLQR 239
Query: 775 CFMRDPV 795
+ PV
Sbjct: 240 ASLHQPV 246
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 121 bits (291), Expect = 1e-28
Identities = 67/204 (32%), Positives = 104/204 (50%), Gaps = 5/204 (2%)
Frame = +1
Query: 193 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 372
V TF++ +L+ + GFE P+ IQQ+A + GRD++ + +G+GKT ++ +
Sbjct: 121 VTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPA 180
Query: 373 LQQIDTSIRECQA-----LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIR 537
+ I+ L+LAPTRELA QIQ+ G + GG IR
Sbjct: 181 IVHINAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIR 240
Query: 538 QLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSAD 717
L GV + + TPGR+ DM+ + + VLDEAD ML GF+ QI + + D
Sbjct: 241 DLIRGVEICIATPGRLLDMLDSNKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPD 300
Query: 718 VQVILLSATMPDDVLEVSRCFMRD 789
Q ++ SAT P +V ++R ++ D
Sbjct: 301 RQTVMFSATWPKEVQRLARDYLND 324
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 119 bits (287), Expect = 4e-28
Identities = 71/197 (36%), Positives = 108/197 (54%), Gaps = 6/197 (3%)
Frame = +1
Query: 196 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISIL 375
++F D+ + L+ + A +P+ IQ+ I ++GR+ I A++G+GKTA F++ I+
Sbjct: 7 KSFSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPII 66
Query: 376 QQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGV 555
++ ALIL PTRELA QI + ALG +LN K +GG ++ L
Sbjct: 67 EKWSKDPSGIFALILTPTRELAIQIDEQFAALGANLNLKHALIVGGMDMIRQSIDLSKRP 126
Query: 556 HVVVGTPGRVYDMITRRALHA----NTIKLFVLDEADEMLSRGFKDQIHDVFKML--SAD 717
HVVV TPGR+ D+I IK V+DEAD +LS F D + D F +L S D
Sbjct: 127 HVVVATPGRLADLIRSNGEETIAGLRRIKFLVMDEADRLLSPTFADDLDDCFSVLPASED 186
Query: 718 VQVILLSATMPDDVLEV 768
Q +L +AT+ D + ++
Sbjct: 187 RQTLLFTATVTDAIRQL 203
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 118 bits (284), Expect = 1e-27
Identities = 70/207 (33%), Positives = 112/207 (54%), Gaps = 8/207 (3%)
Frame = +1
Query: 196 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISIL 375
+TF D NL L R I+ FEKP+++Q I ++G+D++AQA++G+GKTA + I IL
Sbjct: 14 KTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYLIPIL 73
Query: 376 Q------QIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIR 537
+ QID + R AL+L PTRELAQQ+ V+ L + TN + ++
Sbjct: 74 ELLLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKLTAFCSKHIRFINVATNSSDTVQ 133
Query: 538 Q--LESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLS 711
+ L +V+ TP R + L + +K V+DEAD MLS G+ + + + + L
Sbjct: 134 RPLLLDLPDIVIATPSRCVVHVASGVLPLDKLKFLVIDEADLMLSFGYNEDMKTLSRSLP 193
Query: 712 ADVQVILLSATMPDDVLEVSRCFMRDP 792
Q L+SAT+ ++ + + R+P
Sbjct: 194 RGTQSFLMSATLSKNIASLQKLVCRNP 220
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 118 bits (283), Expect = 1e-27
Identities = 71/204 (34%), Positives = 115/204 (56%), Gaps = 6/204 (2%)
Frame = +1
Query: 193 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATF---S 363
+E F D+ L E + + I GFE + IQ+R+I P + GRDV+ A++G+GKT F +
Sbjct: 88 IEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPT 147
Query: 364 ISILQQIDTSIRE-CQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQ 540
I +L + R +I++PTRELA QI V L + + IGG N R + +
Sbjct: 148 IEMLYALKFKPRNGTGVIIISPTRELALQIFGVAKELLKYHHQTFGIVIGGANRRAEADK 207
Query: 541 LESGVHVVVGTPGRVYDMI-TRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKML-SA 714
L GV+++V TPGR+ D + + ++ V+DEAD +L GF+D++ + K+L S
Sbjct: 208 LVKGVNLLVATPGRLLDHLQNTKGFVFRNLRSLVIDEADRILEIGFEDEMRQIMKILPSE 267
Query: 715 DVQVILLSATMPDDVLEVSRCFMR 786
+ Q +L SAT V +++R ++
Sbjct: 268 NRQTLLFSATQTTKVEDLARISLK 291
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 116 bits (278), Expect = 5e-27
Identities = 74/233 (31%), Positives = 120/233 (51%), Gaps = 27/233 (11%)
Frame = +1
Query: 178 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTAT 357
D + +++ L E+L+ + +++PS+IQ+ AI +Q +D+I A++G+GKTA
Sbjct: 243 DLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGKTAA 302
Query: 358 FSISILQQIDT--SIRECQ------ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGG 513
F I ++ I + E A++LAPTRELAQQIQ + L +C + +GG
Sbjct: 303 FIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQVEGNKFAEPLGFRCVSVVGG 362
Query: 514 TNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHD 693
E Q+ G H+VV TPGR+ D + RR + V+DEAD ML GF+D ++
Sbjct: 363 HAFEEQSFQMSQGAHIVVATPGRLLDCLERRLFVLSQCTYVVMDEADRMLDMGFEDDVNK 422
Query: 694 VFKML-------------------SADVQVILLSATMPDDVLEVSRCFMRDPV 795
+ L S+ Q I+ SAT+P V +++ ++ +PV
Sbjct: 423 ILSSLPSSNASEKDGSILATANSSSSRRQTIMFSATLPPRVANLAKSYLIEPV 475
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 114 bits (274), Expect = 2e-26
Identities = 69/214 (32%), Positives = 113/214 (52%), Gaps = 8/214 (3%)
Frame = +1
Query: 178 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTAT 357
D + V ++ L + + I + G+EKP++IQ +AI GRDVI A++G+GKT
Sbjct: 412 DCPKPVTSWSQCGLSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIA 471
Query: 358 FSISILQQI--DTSIRECQ---ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 522
F + + + I ++ + A+I+ PTRELA QI + LN + GG +
Sbjct: 472 FLLPMFRHIKDQRPLKTGEGPIAIIMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPI 531
Query: 523 REDIRQLESGVHVVVGTPGRVYDMITR---RALHANTIKLFVLDEADEMLSRGFKDQIHD 693
++ I L+ G +VV TPGR+ D+++ R + + VLDEAD M GF+ Q+
Sbjct: 532 KDQIADLKRGAEIVVCTPGRMIDVLSANAGRVTNLHRCTYLVLDEADRMFDLGFEPQVMR 591
Query: 694 VFKMLSADVQVILLSATMPDDVLEVSRCFMRDPV 795
+ + D Q +L SAT P + ++R ++ PV
Sbjct: 592 IINNIRPDRQTVLFSATFPRAMEALARKVLKKPV 625
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 110 bits (264), Expect = 3e-25
Identities = 79/223 (35%), Positives = 113/223 (50%), Gaps = 22/223 (9%)
Frame = +1
Query: 193 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 372
V F L LL+ I G+ +P+ +Q+ +I GRD++A AQ+G+GKTA F I
Sbjct: 168 VNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPI 227
Query: 373 L--------------QQIDTSIRECQA----LILAPTRELAQQIQKVVIALGDHLNAKCH 498
L Q R +A LILAPTREL QI + +
Sbjct: 228 LSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHEESRKFCYRSWVRPC 287
Query: 499 ACIGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFK 678
A GG ++R IRQ++ G ++ TPGR+ D+I R + IK VLDEAD ML GF+
Sbjct: 288 AVYGGADIRAQIRQIDQGCDLLSATPGRLVDLIDRGRISLANIKFLVLDEADRMLDMGFE 347
Query: 679 DQIHDVFK---MLSADV-QVILLSATMPDDVLEVSRCFMRDPV 795
QI + + M S + Q ++ SAT P D+ ++R F++D V
Sbjct: 348 PQIRHIVEGADMTSVEERQTLMFSATFPRDIQLLARDFLKDYV 390
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 106 bits (255), Expect = 3e-24
Identities = 65/206 (31%), Positives = 109/206 (52%), Gaps = 8/206 (3%)
Frame = +1
Query: 202 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 381
FD++++ +L G+ Y ++P+ IQ + GRDV+ A++G+GKT F I LQ
Sbjct: 169 FDELDVSAKLREGLKNY--KEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQY 226
Query: 382 ID---TSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESG 552
++ + + L+++PTRELA Q + + +L N K GG E R ++
Sbjct: 227 LNGLSDNKSVPRVLVVSPTRELAIQTYENLNSLIQGTNLKAVVVYGGAPKSEQARAAKNA 286
Query: 553 VHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFK-----MLSAD 717
V++GTPGR+ D+I ++ + + VLDEAD ML GF+ I ++ +
Sbjct: 287 -SVIIGTPGRLLDLINDGSIDCSQVGYLVLDEADRMLDTGFEQDIRNIISHTPDPTRNGS 345
Query: 718 VQVILLSATMPDDVLEVSRCFMRDPV 795
Q + SAT P+ V ++ F++DPV
Sbjct: 346 RQTVFFSATWPESVRALAATFLKDPV 371
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 102 bits (245), Expect = 5e-23
Identities = 66/195 (33%), Positives = 99/195 (50%), Gaps = 8/195 (4%)
Frame = +1
Query: 193 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 372
V + +L E+L + GF KP IQ I G D+I +A +G+GKT F I I
Sbjct: 121 VSAWAHFSLSPEMLGSLSKAGFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPI 180
Query: 373 LQQI--DTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLE 546
L+ + + QAL++APTRELA QI + + N + + GG V++ R L
Sbjct: 181 LEHCLRNVDAKYVQALVVAPTRELAHQICQHFELIKPSPNIRVMSITGGLAVQKQQRLLN 240
Query: 547 SGVHVVVGTPGRVYDMITRRALHAN--TIKLFVLDEADEMLSRGFKDQIHDVFKMLSADV 720
HVVV TPGR++ +I L N IK VLDEAD +L + +++ + ++L +
Sbjct: 241 KHPHVVVATPGRLWSVINENNLTGNFKKIKCLVLDEADRLLQKSHFEELSKLLEILGNPM 300
Query: 721 ----QVILLSATMPD 753
Q + SAT +
Sbjct: 301 HTQRQTFIFSATFDE 315
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 99.5 bits (237), Expect = 5e-22
Identities = 58/207 (28%), Positives = 113/207 (54%), Gaps = 5/207 (2%)
Frame = +1
Query: 187 QVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSI 366
+ V+ F ++ L + + F + IQ++ I ++GRD++ A++G+GKT F +
Sbjct: 36 ETVDHFAELPLTQPTKSALKNAHFITLTEIQKQCIPSALKGRDILGAAKTGSGKTLAFIV 95
Query: 367 SILQQID----TSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDI 534
+++ + TS+ AL+++PTRELA Q + ++ +G + IGG N +E+
Sbjct: 96 PLIENLYRKKWTSLDGLGALVISPTRELAIQTFETLVKIGRLHSFSAGLIIGGNNYKEEK 155
Query: 535 RQLESGVHVVVGTPGRVYDMITRRA-LHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLS 711
+L S ++++V TPGR+ I + + +++ +LDEAD +L GF+ + + L
Sbjct: 156 ERL-SRMNILVCTPGRLLQHIDQAVNFDTSGLQMLILDEADRILDMGFRTTLDAIVSSLP 214
Query: 712 ADVQVILLSATMPDDVLEVSRCFMRDP 792
Q +L SAT V +++R +++P
Sbjct: 215 VHRQTMLFSATQTKSVKDLARLSLQNP 241
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 90.6 bits (215), Expect = 2e-19
Identities = 61/200 (30%), Positives = 101/200 (50%), Gaps = 13/200 (6%)
Frame = +1
Query: 199 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQ 378
+F +N+ + L + A GF+K + +Q AI ++ +D++ +A +G+GKT + +
Sbjct: 2 SFQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFD 61
Query: 379 QI---DTSIRECQALILAPTRELAQQIQKVVIAL----------GDHLNAKCHACIGGTN 519
++ DT ALI+APTRELA QI V L G L A + GT
Sbjct: 62 KVTRRDTDETGLGALIVAPTRELATQIFNVTKELLAYQPDSLDGGKKLVADMYIGGKGTL 121
Query: 520 VREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVF 699
+ E VV+GTPGR+ +M++ + + +++ +LDEAD ++ GF+ + +
Sbjct: 122 TNDLASFREKNPSVVIGTPGRLNEMLSH--ISSKHLEILILDEADTLIDMGFQRTLQSII 179
Query: 700 KMLSADVQVILLSATMPDDV 759
L + L SATM D V
Sbjct: 180 SQLPKQRRTGLFSATMNDTV 199
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 85.4 bits (202), Expect = 8e-18
Identities = 56/192 (29%), Positives = 97/192 (50%), Gaps = 15/192 (7%)
Frame = +1
Query: 265 PSAIQQRAIMPCIQ--GRDVIAQAQSGTGKTATFSISILQQI-------DTSIRECQALI 417
P+AIQ + + +D +AQ+G+GKT + + I+Q++ T A+I
Sbjct: 162 PTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVI 221
Query: 418 LAPTRELAQQIQKVVIALGD----HLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRV 585
+APTREL QQI V L + H C+ IGG + + ++ GV++++GTPGR+
Sbjct: 222 MAPTRELCQQIYNVANKLNNNPLSHWIVSCNV-IGGEKKKSEKARIRKGVNILIGTPGRL 280
Query: 586 YDMI-TRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPD-DV 759
D + AL + ++ VLDE D ++ GF++ + + L + +I ++P V
Sbjct: 281 ADHLENTEALDVSQVRWVVLDEGDRLMDMGFEETLTKILSYLESQSSIIKKDLSIPSRKV 340
Query: 760 LEVSRCFMRDPV 795
+ M+D V
Sbjct: 341 TMLCSATMKDTV 352
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 81.8 bits (193), Expect = 1e-16
Identities = 55/183 (30%), Positives = 94/183 (51%), Gaps = 9/183 (4%)
Frame = +1
Query: 253 GFEKPSAIQQRAIMPCIQGRD-VIAQAQSGTGKTATFSISILQQI-----DTSIRECQAL 414
GFEK + +QQR + + + QA++GTGKT F + + + + + ++
Sbjct: 57 GFEKMTPVQQRVLNEVFPNEENAVVQAKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSV 116
Query: 415 ILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN-VREDIRQLESGVHVVVGTPGRVYD 591
IL+PTRELA QI + L + IGG + +RE+ ++++ TPGR+ D
Sbjct: 117 ILSPTRELALQIFEEARKLTYGTGIRVSYAIGGNSKMREENAIRRGNANLLIATPGRLED 176
Query: 592 MITR-RALHANTIKLFVLDEADEMLSRGFKDQIHDVFK-MLSADVQVILLSATMPDDVLE 765
+ R L + + F+LDEAD ++ GF + I ++ + + + + + SATMP V
Sbjct: 177 HLQNPRILESLSTDSFILDEADRLMDMGFAESILNIHEAVTTTKTRKLCFSATMPPKVSN 236
Query: 766 VSR 774
V R
Sbjct: 237 VFR 239
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 80.6 bits (190), Expect = 2e-16
Identities = 60/199 (30%), Positives = 99/199 (49%), Gaps = 8/199 (4%)
Frame = +1
Query: 223 EELLRGIYAYGFEKPSAIQ----QRAIMPCIQG-RDVIAQAQSGTGKTATFSISILQQID 387
EE GI +K + + QR +P I RD++A A +G+GKT + ILQ++
Sbjct: 50 EEFPEGILCENLKKQNITECTTIQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQ 109
Query: 388 TSI-RECQALILAPTRELAQQIQKVVIALGDHLNAK-CHACIGGTNVREDIRQLESGVHV 561
+ +A+I+APTREL +QI + L + K ++E +L +
Sbjct: 110 LHVPGGYRAIIVAPTRELCEQIYRQAEKLSFGTSLKIIELSKSNEKIQEKAPKLREKYDM 169
Query: 562 VVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQI-HDVFKMLSADVQVILLS 738
+GTP R+ I + L ++ FV+DEAD + GF +Q H + S+++ L S
Sbjct: 170 CIGTPMRLVQAI-QTGLSFEKVEFFVMDEADRLFEPGFIEQTDHILSACTSSNICKSLFS 228
Query: 739 ATMPDDVLEVSRCFMRDPV 795
AT+P V E+++ DP+
Sbjct: 229 ATIPSRVEELAKVVTVDPI 247
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 68.1 bits (159), Expect = 1e-12
Identities = 48/172 (27%), Positives = 80/172 (46%), Gaps = 8/172 (4%)
Frame = +1
Query: 220 KEELLRGIYAYGFEKPSAIQQRAIMPCIQ-GRDVIAQAQSGTGKTATFSISILQQID-TS 393
K+ + RG P +Q P G DV A +G+GKT ++ I I+Q + +
Sbjct: 143 KQNITRGFAVQAAVLPLLLQDGRHGPMYSYGGDVCVSAATGSGKTLSYVIPIVQCLSHRT 202
Query: 394 IRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQL-----ESGVH 558
+ + +++ PTREL Q+ K + A G ++R + QL E +
Sbjct: 203 VPRLRCVVIVPTRELTVQVAKTFEYYMSGAGLQVCAWTGQKSLRHETYQLNGDENECRID 262
Query: 559 VVVGTPGRVYDMITR-RALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLS 711
V+V TPGR+ D I + ++ V+DEAD +L + F+D + V +S
Sbjct: 263 VLVSTPGRLVDHIRNDESFSLQHLRYMVIDEADRLLDQSFQDWVDTVMMEIS 314
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 44.0 bits (99), Expect = 3e-05
Identities = 41/154 (26%), Positives = 67/154 (43%), Gaps = 9/154 (5%)
Frame = +1
Query: 217 LKEELLRGIY-AYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTS 393
L +EL+ +Y + EK Q AI G VI + +GK+ + I ILQ +
Sbjct: 295 LSQELINALYTSRNIEKTYKHQADAINHLWNGFHVIVSTSTSSGKSLIYQIPILQSL-LE 353
Query: 394 IRECQALILAPTRELAQQIQKVVIALGDHL----NAKCHACIGGTNVREDIRQLESGVHV 561
+ A + PT+ LAQ +K +I + ++ N + G T + E + ++
Sbjct: 354 DNQSTAFFVFPTKSLAQDQKKSLIDILSYMPTLKNIRVDTFDGDTPL-ESRESIIRSANI 412
Query: 562 VVGTPGRVYDMITRRA----LHANTIKLFVLDEA 651
+ P ++ I A +KLFVLDEA
Sbjct: 413 IFTNPDMLHQTILPNANRWYYFFKNLKLFVLDEA 446
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 35.1 bits (77), Expect = 0.012
Identities = 42/177 (23%), Positives = 81/177 (45%), Gaps = 19/177 (10%)
Frame = +1
Query: 280 QRAIMPCIQGRD--VIAQAQSGTGKTATFSISILQQIDTSIRE--------CQALILAPT 429
Q + P G D ++ A +G GKT + IL ++ +RE + + +AP
Sbjct: 524 QSHLYPIAFGTDENILLCAPTGAGKTNVAMLCILNELQKHLREDLSFNLQNFKIVYIAPL 583
Query: 430 RELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRA 609
+ L Q++ N + G + + +Q S ++V TP + +D+ITR+A
Sbjct: 584 KALVQEMVNNFSKRLTPYNIRVAELTGDSQL---TKQQISETQIIVTTPEK-WDIITRKA 639
Query: 610 ---LHANTIKLFVLDEADEML-SRG--FKDQIHDVFKMLS---ADVQVILLSATMPD 753
+ N ++L ++DE + RG + + +F+ V+++ LSAT+P+
Sbjct: 640 NDLSYVNLVRLVIIDEVHLLHDERGPVLESIVARIFRHQEETLEQVRLVGLSATLPN 696
>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 29.9 bits (64), Expect = 0.44
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +1
Query: 493 CHACIGGTNVREDIRQLE-SGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEM 660
C I G N R + +L S + ++ + + R + A+T K+ +LDEAD M
Sbjct: 76 CARKIYGPNYRNQLMELNASDDRGIDAVREQIKNFASTRQIFASTFKMIILDEADAM 132
>SPBC27.02c |ask1|mug181|DASH complex subunit
Ask1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 307
Score = 29.5 bits (63), Expect = 0.58
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +1
Query: 169 LDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRD 315
LDT+W V + NL+ + + I + F PS I + MP + R+
Sbjct: 184 LDTNWQVQVTPREPKNLQSQEVMDIDSSPFVSPSPISMKMDMPSLNDRN 232
>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 462
Score = 28.7 bits (61), Expect = 1.0
Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 4/105 (3%)
Frame = +1
Query: 382 IDTSIRECQALILAPTR-ELAQQIQKVVIALGDHLNAK-CHACIGGTNVREDIRQLESGV 555
+D IR+ A+ +P +LA + + D H +++ D+R +ESGV
Sbjct: 345 LDEHIRQIVAMAWSPNGYQLATSSADDTVKIWDLRKVSLAHTIPAHSSLVSDVRYIESGV 404
Query: 556 HVVVGTPGRVYDMITR--RALHANTIKLFVLDEADEMLSRGFKDQ 684
+ + T G YD + L+ + IK V E M G+ D+
Sbjct: 405 NRFIATSG--YDGCVKLWNPLNCSLIKSMVGHEEKVMSVDGYGDR 447
>SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 466
Score = 27.9 bits (59), Expect = 1.8
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +1
Query: 166 TLDTDWDQVVETFDDMNLKEELLRGIYAYGF 258
T D WD E FDD N + +GI+ F
Sbjct: 281 TDDIAWDPQCEYFDDCNSDQTAFKGIFMQSF 311
>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 505
Score = 27.5 bits (58), Expect = 2.3
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Frame = +1
Query: 337 GTGKTATFSISILQQI----DTSIRECQALILAP-TRELAQQIQ 453
G G T F+ SILQQI + SI +C + +P R + ++IQ
Sbjct: 89 GKGSTCAFTSSILQQIQKSGERSIPKCIGMYTSPHLRSVCERIQ 132
>SPAPJ696.01c |vps17||retromer complex subunit
Vps17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 549
Score = 27.1 bits (57), Expect = 3.1
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +3
Query: 369 DSTTNRYKHS*MSSFDPGSHKRAGPTNSEGGDSS 470
D+ TNR + SSFD S P+N++G ++
Sbjct: 487 DAWTNRKRPGYSSSFDGSSQSTFNPSNNDGAHNT 520
>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
Length = 613
Score = 26.6 bits (56), Expect = 4.1
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +1
Query: 448 IQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGT-PGRVYDMITRRALHANT 624
++ + A+ DHL+ + CIG N+ ED VH + T G+ ++T H++
Sbjct: 134 VEMIRRAISDHLDLLNNCCIGIANLNED------SVHKISLTRSGKPSQLVTVSCRHSSV 187
Query: 625 IK 630
I+
Sbjct: 188 IQ 189
>SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 301
Score = 26.6 bits (56), Expect = 4.1
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +2
Query: 143 DLREWTLGHLTPT 181
DLREWTLG L P+
Sbjct: 110 DLREWTLGFLQPS 122
>SPBC17G9.12c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 274
Score = 26.6 bits (56), Expect = 4.1
Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Frame = -2
Query: 774 SRYFQYI-IRHGSRE*YDLNIS*QHLEDIMDLVLETSGQHFISFIKNKKFDGVGMKRTTS 598
SRY + I+ + Y +S L++I+ L+ +G F+ FI N + + +T
Sbjct: 64 SRYLEEASIKRIEKSQYFSGLSEGALDNIVQLITLRAG--FVEFI-NALVPDLRVSKTI- 119
Query: 597 YHIIYTTWSAHHHMNTTLQLANIFTDIGATNAS 499
+H++ WSA T L ++ D+ +A+
Sbjct: 120 FHVLSVNWSARVIEQTLLHHTDLTADLLCVHAN 152
>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1234
Score = 26.2 bits (55), Expect = 5.4
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 652 DEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVL 762
+EMLS +H V+ S + + LS+T P+ +L
Sbjct: 299 EEMLSPSSLYTLHQVYTATSESINIKTLSSTTPEYIL 335
>SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein
Pvg2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 389
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -2
Query: 483 QVITKSYHHLLNLLGQLSCGSQDQ 412
+++ KSYH+L N QLS ++DQ
Sbjct: 165 ELVDKSYHNLHNAWSQLSREAKDQ 188
>SPAC4H3.13 |||transcription factor Pcc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 88
Score = 25.8 bits (54), Expect = 7.1
Identities = 11/53 (20%), Positives = 27/53 (50%)
Frame = +1
Query: 415 ILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGT 573
+LAP REL +++ + + + D+ ++C R + L +++++ T
Sbjct: 29 VLAPDRELKEELVQRNLFVDDNYLVVNYSCSSARMTRVTVNSLFENLYLIIDT 81
>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
metabolism|Schizosaccharomyces pombe|chr 2|||Manual
Length = 811
Score = 25.8 bits (54), Expect = 7.1
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Frame = -2
Query: 543 QLANIFTDIGAT---NASMAFSIQVITKSYHHLLNLL 442
+L NIFT + N+ FS+ +++++Y H NLL
Sbjct: 598 KLQNIFTTLYTAWCHNSIAVFSLCLLSQNYEHAANLL 634
>SPAC5D6.08c |mes1||meiosis II protein Mes1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 101
Score = 25.8 bits (54), Expect = 7.1
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 163 QGPFPEVHRNYLDPSMAHFWNPLANL 86
Q P P VH ++ PS A NPL ++
Sbjct: 75 QNPPPSVHSSHKQPSKARSPNPLLSM 100
>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
Length = 957
Score = 25.4 bits (53), Expect = 9.4
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = -2
Query: 690 MDLVLETSGQHFISFIKNKKFDGVGMKRTTSYHI 589
+D V E HF F+KN+ D + +R H+
Sbjct: 476 LDAVYERECNHFKKFVKNELKDSLESQRVDLRHL 509
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 25.4 bits (53), Expect = 9.4
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +1
Query: 172 DTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGR 312
DTDWD +V + D++L+ RGI A G + + + P + +
Sbjct: 618 DTDWDALV-SLSDLDLQN---RGIMALGARRKLLKSFQEVAPLVSSK 660
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,498,178
Number of Sequences: 5004
Number of extensions: 79397
Number of successful extensions: 292
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 252
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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