Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0539
(796 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 295 2e-80
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 295 3e-80
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 290 6e-79
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 281 5e-76
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 257 5e-69
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 166 2e-41
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 166 2e-41
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 161 5e-40
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 161 5e-40
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 159 3e-39
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 148 5e-36
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 148 5e-36
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 140 1e-33
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 138 5e-33
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 133 1e-31
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 133 1e-31
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 133 1e-31
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 132 3e-31
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 132 3e-31
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 131 4e-31
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 130 1e-30
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 128 3e-30
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 126 2e-29
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 126 2e-29
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 126 2e-29
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 125 3e-29
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 123 1e-28
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 122 2e-28
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 120 8e-28
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 119 2e-27
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 119 2e-27
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 118 3e-27
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 118 4e-27
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 118 4e-27
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 116 1e-26
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 116 1e-26
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 116 2e-26
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 113 1e-25
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 113 1e-25
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 113 1e-25
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 113 2e-25
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 113 2e-25
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 112 3e-25
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 105 4e-23
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 104 6e-23
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 104 8e-23
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 103 1e-22
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 101 4e-22
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 101 6e-22
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 101 7e-22
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 100 1e-21
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 99 3e-21
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 97 9e-21
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 97 1e-20
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 95 4e-20
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 95 6e-20
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 89 4e-18
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 89 4e-18
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 85 4e-17
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 84 1e-16
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 81 6e-16
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 74 1e-13
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 59 4e-09
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 52 3e-07
At2g28600.1 68415.m03476 expressed protein 43 3e-04
At4g35740.1 68417.m05072 DNA helicase (RECQl3) identical to DNA ... 33 0.29
At3g10020.1 68416.m01202 expressed protein 33 0.29
At2g04620.1 68415.m00470 cation efflux family protein potential ... 33 0.29
At2g42580.1 68415.m05269 tetratricopeptide repeat (TPR)-containi... 30 1.5
At1g31360.1 68414.m03838 DNA helicase, putative (RECQl2) nearly ... 30 1.5
At4g14365.1 68417.m02213 zinc finger (C3HC4-type RING finger) fa... 29 3.6
At4g17920.1 68417.m02670 zinc finger (C3HC4-type RING finger) fa... 29 4.7
At3g49970.1 68416.m05464 phototropic-responsive protein, putativ... 29 4.7
At1g15140.3 68414.m01810 oxidoreductase NAD-binding domain-conta... 29 4.7
At1g15140.2 68414.m01809 oxidoreductase NAD-binding domain-conta... 29 4.7
At1g15140.1 68414.m01808 oxidoreductase NAD-binding domain-conta... 29 4.7
At4g08990.1 68417.m01485 DNA (cytosine-5-)-methyltransferase, pu... 28 6.2
At2g24020.1 68415.m02869 expressed protein contains Pfam domain ... 28 6.2
At4g14090.1 68417.m02175 UDP-glucoronosyl/UDP-glucosyl transfera... 28 8.2
At3g58620.1 68416.m06533 tetratricopeptide repeat (TPR)-containi... 28 8.2
At2g43110.1 68415.m05352 expressed protein 28 8.2
At1g76010.1 68414.m08825 expressed protein 28 8.2
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 295 bits (724), Expect = 2e-80
Identities = 140/207 (67%), Positives = 172/207 (83%)
Frame = +1
Query: 175 TDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTA 354
T +D V E+FD M L+E LLRGIYAYGFEKPSAIQQR I+P +G DVI QAQSGTGKTA
Sbjct: 32 TSYDDVHESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTA 91
Query: 355 TFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDI 534
TF +LQQ+D S+ +CQAL+LAPTRELAQQI+KV+ ALGD+L K HAC+GGT+VRED
Sbjct: 92 TFCSGVLQQLDFSLIQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQ 151
Query: 535 RQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSA 714
R L++GVHVVVGTPGRV+DM+ R++L A+ IK+FVLDEADEMLSRGFKDQI+D+F++L
Sbjct: 152 RILQAGVHVVVGTPGRVFDMLKRQSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPP 211
Query: 715 DVQVILLSATMPDDVLEVSRCFMRDPV 795
+QV + SATMP + LE++R FM PV
Sbjct: 212 KIQVGVFSATMPPEALEITRKFMSKPV 238
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 295 bits (723), Expect = 3e-80
Identities = 139/210 (66%), Positives = 175/210 (83%)
Frame = +1
Query: 166 TLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTG 345
T T++D+V ++FD M L+ +LLRGIYAYGFEKPSAIQQR I+P +G DVI QAQSGTG
Sbjct: 31 TFYTNYDEVCDSFDAMELQPDLLRGIYAYGFEKPSAIQQRGIIPFCKGLDVIQQAQSGTG 90
Query: 346 KTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVR 525
KTATF +LQQ+D S+ +CQAL+LAPTRELAQQI+KV+ ALGD+L K AC+GGT+VR
Sbjct: 91 KTATFCSGVLQQLDISLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKAQACVGGTSVR 150
Query: 526 EDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKM 705
ED R L+SGVHVVVGTPGRV+D++ R++L A+ IK+FVLDEADEMLSRGFKDQI+D+F++
Sbjct: 151 EDQRVLQSGVHVVVGTPGRVFDLLRRQSLRADAIKMFVLDEADEMLSRGFKDQIYDIFQL 210
Query: 706 LSADVQVILLSATMPDDVLEVSRCFMRDPV 795
L + VQV + SATMP + LE++R FM PV
Sbjct: 211 LPSKVQVGVFSATMPPEALEITRKFMNKPV 240
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 290 bits (712), Expect = 6e-79
Identities = 137/207 (66%), Positives = 171/207 (82%)
Frame = +1
Query: 175 TDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTA 354
T +D+V E+FD M L+E LLRGIYAYGFEKPSAIQQR I+P +G DVI QAQSGTGKTA
Sbjct: 32 TSYDEVHESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTA 91
Query: 355 TFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDI 534
TF +LQQ+D ++ +CQAL+LAPTRELAQQI+KV+ ALGD+ K HAC+GGT+VRED
Sbjct: 92 TFCSGVLQQLDYALLQCQALVLAPTRELAQQIEKVMRALGDYQGVKVHACVGGTSVREDQ 151
Query: 535 RQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSA 714
R L++GVHVVVGTPGRV+DM+ R++L + IK+FVLDEADEMLSRGFKDQI+D+F++L
Sbjct: 152 RILQAGVHVVVGTPGRVFDMLRRQSLRPDCIKMFVLDEADEMLSRGFKDQIYDIFQLLPP 211
Query: 715 DVQVILLSATMPDDVLEVSRCFMRDPV 795
+QV + SATMP + LE++R FM PV
Sbjct: 212 KIQVGVFSATMPPEALEITRKFMSKPV 238
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 281 bits (688), Expect = 5e-76
Identities = 131/207 (63%), Positives = 167/207 (80%)
Frame = +1
Query: 175 TDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTA 354
TD + + +F+DM +KE++LRG+Y YGFEKPSAIQQRA+MP +QGRDVIAQAQSGTGKT+
Sbjct: 28 TDGIEPITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGTGKTS 87
Query: 355 TFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDI 534
++S+ Q +DTS RE QALIL+PTRELA Q +K + A+G H N + HACIGG +V EDI
Sbjct: 88 MIALSVCQVVDTSSREVQALILSPTRELATQTEKTIQAIGLHANIQAHACIGGNSVGEDI 147
Query: 535 RQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSA 714
R+LE GVHVV GTPGRV DMI RR+L IKL +LDE+DEMLSRGFKDQI+DV++ L
Sbjct: 148 RKLEHGVHVVSGTPGRVCDMIKRRSLRTRAIKLLILDESDEMLSRGFKDQIYDVYRYLPP 207
Query: 715 DVQVILLSATMPDDVLEVSRCFMRDPV 795
D+QV L+SAT+P ++LE++ FM +PV
Sbjct: 208 DLQVCLVSATLPHEILEMTSKFMTEPV 234
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 257 bits (630), Expect = 5e-69
Identities = 114/201 (56%), Positives = 159/201 (79%)
Frame = +1
Query: 193 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 372
+++FDDM + +++LRG+Y YG++KPS IQQRA++P ++GRDVIAQAQSGTGKT+ +IS+
Sbjct: 21 IKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMIAISV 80
Query: 373 LQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESG 552
Q ++ S R+ Q L+L+P+RELA Q +K + A+G H N + HACIGG ++ EDI++LE G
Sbjct: 81 CQIVNISSRKVQVLVLSPSRELASQTEKTIQAIGAHTNIQAHACIGGKSIGEDIKKLERG 140
Query: 553 VHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVIL 732
VH V GTPGRVYDMI R +L +KL VLDE+DEMLS+G KDQI+DV++ L D+QV L
Sbjct: 141 VHAVSGTPGRVYDMIKRGSLQTKAVKLLVLDESDEMLSKGLKDQIYDVYRALPHDIQVCL 200
Query: 733 LSATMPDDVLEVSRCFMRDPV 795
+SAT+P ++LE++ FM DPV
Sbjct: 201 ISATLPQEILEMTEKFMTDPV 221
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 166 bits (403), Expect = 2e-41
Identities = 81/197 (41%), Positives = 122/197 (61%)
Frame = +1
Query: 202 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 381
F+D LK ELL GIY GFE+PS IQ+ +I + GRD++A+A++GTGKTA F I +L++
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEK 192
Query: 382 IDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHV 561
ID QA+I+ PTRELA Q +V LG HL + GGT++++DI +L VH+
Sbjct: 193 IDQDNNVIQAVIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHL 252
Query: 562 VVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSA 741
+VGTPGR+ D+ + + V+DEAD++LS+ F+ + + L Q+++ SA
Sbjct: 253 LVGTPGRILDLTKKGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLISFLPESRQILMFSA 312
Query: 742 TMPDDVLEVSRCFMRDP 792
T P V + F+ +P
Sbjct: 313 TFPVTVKDFKDRFLTNP 329
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 166 bits (403), Expect = 2e-41
Identities = 81/197 (41%), Positives = 122/197 (61%)
Frame = +1
Query: 202 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 381
F+D LK ELL GIY GFE+PS IQ+ +I + GRD++A+A++GTGKTA F I +L++
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEK 192
Query: 382 IDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHV 561
ID QA+I+ PTRELA Q +V LG HL + GGT++++DI +L VH+
Sbjct: 193 IDQDNNVIQAVIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHL 252
Query: 562 VVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSA 741
+VGTPGR+ D+ + + V+DEAD++LS+ F+ + + L Q+++ SA
Sbjct: 253 LVGTPGRILDLTKKGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLISFLPESRQILMFSA 312
Query: 742 TMPDDVLEVSRCFMRDP 792
T P V + F+ +P
Sbjct: 313 TFPVTVKDFKDRFLTNP 329
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 161 bits (391), Expect = 5e-40
Identities = 80/197 (40%), Positives = 121/197 (61%)
Frame = +1
Query: 202 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 381
F+D LK +LL+GIY GFEKPS IQ+ +I + G D++A+A++GTGKT F I +L++
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEK 185
Query: 382 IDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHV 561
ID + QA+IL PTRELA Q +V L +LN + GGT++R+DI +L VH+
Sbjct: 186 IDPNNNVIQAMILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMRLHQPVHL 245
Query: 562 VVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSA 741
+VGTPGR+ D+ + + V+DEAD++LS F+ + ++ + L + Q ++ SA
Sbjct: 246 LVGTPGRILDLTKKGVCVLKDCAMLVMDEADKLLSAEFQPSLEELIQFLPQNRQFLMFSA 305
Query: 742 TMPDDVLEVSRCFMRDP 792
T P V +R P
Sbjct: 306 TFPVTVKAFKDRHLRKP 322
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 161 bits (391), Expect = 5e-40
Identities = 80/197 (40%), Positives = 121/197 (61%)
Frame = +1
Query: 202 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 381
F+D LK +LL+GIY GFEKPS IQ+ +I + G D++A+A++GTGKT F I +L++
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEK 185
Query: 382 IDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHV 561
ID + QA+IL PTRELA Q +V L +LN + GGT++R+DI +L VH+
Sbjct: 186 IDPNNNVIQAMILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMRLHQPVHL 245
Query: 562 VVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSA 741
+VGTPGR+ D+ + + V+DEAD++LS F+ + ++ + L + Q ++ SA
Sbjct: 246 LVGTPGRILDLTKKGVCVLKDCAMLVMDEADKLLSAEFQPSLEELIQFLPQNRQFLMFSA 305
Query: 742 TMPDDVLEVSRCFMRDP 792
T P V +R P
Sbjct: 306 TFPVTVKAFKDRHLRKP 322
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 159 bits (385), Expect = 3e-39
Identities = 80/197 (40%), Positives = 119/197 (60%)
Frame = +1
Query: 202 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 381
F+D LK +LLRGIY GFEKPS IQ+ +I + G D++A+A++GTGKT F I L++
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPTLEK 215
Query: 382 IDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHV 561
ID QA+IL PTRELA Q +V L +L + GGT++R+DI +L VH+
Sbjct: 216 IDPENNVIQAVILVPTRELALQTSQVCKELSKYLKIEVMVTTGGTSLRDDIMRLYQPVHL 275
Query: 562 VVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSA 741
+VGTPGR+ D+ + + V+DEAD++LS F+ I ++ + L Q+++ SA
Sbjct: 276 LVGTPGRILDLAKKGVCVLKDCAMLVMDEADKLLSVEFQPSIEELIQFLPESRQILMFSA 335
Query: 742 TMPDDVLEVSRCFMRDP 792
T P V +++ P
Sbjct: 336 TFPVTVKSFKDRYLKKP 352
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 148 bits (358), Expect = 5e-36
Identities = 85/202 (42%), Positives = 118/202 (58%), Gaps = 4/202 (1%)
Frame = +1
Query: 202 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 381
F D LK ELLR I GFE PS +Q I I G DVI QA+SG GKTA F +S LQQ
Sbjct: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
Query: 382 IDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTNVR--EDIRQLESG 552
I+ S + AL+L TRELA QI + +L + K GG N++ +D+ + E
Sbjct: 108 IEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNEC- 166
Query: 553 VHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEML-SRGFKDQIHDVFKMLSADVQVI 729
H+VVGTPGRV + + L ++ F+LDE D+ML S + + ++FKM D QV+
Sbjct: 167 PHIVVGTPGRVLALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVM 226
Query: 730 LLSATMPDDVLEVSRCFMRDPV 795
+ SAT+ ++ V + FM+DP+
Sbjct: 227 MFSATLSKEIRPVCKKFMQDPM 248
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 148 bits (358), Expect = 5e-36
Identities = 85/202 (42%), Positives = 118/202 (58%), Gaps = 4/202 (1%)
Frame = +1
Query: 202 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 381
F D LK ELLR I GFE PS +Q I I G DVI QA+SG GKTA F +S LQQ
Sbjct: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
Query: 382 IDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTNVR--EDIRQLESG 552
I+ S + AL+L TRELA QI + +L + K GG N++ +D+ + E
Sbjct: 108 IEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNEC- 166
Query: 553 VHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEML-SRGFKDQIHDVFKMLSADVQVI 729
H+VVGTPGRV + + L ++ F+LDE D+ML S + + ++FKM D QV+
Sbjct: 167 PHIVVGTPGRVLALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVM 226
Query: 730 LLSATMPDDVLEVSRCFMRDPV 795
+ SAT+ ++ V + FM+DP+
Sbjct: 227 MFSATLSKEIRPVCKKFMQDPM 248
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 140 bits (338), Expect = 1e-33
Identities = 72/202 (35%), Positives = 121/202 (59%), Gaps = 6/202 (2%)
Frame = +1
Query: 208 DMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQI- 384
D+ + E+++ + G EK IQ+ + P ++GRD+I +A++GTGKT F I I+ +I
Sbjct: 120 DLGISPEIVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKII 179
Query: 385 -----DTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLES 549
+ Q L+LAPTRELA+Q++K L+ C GGT + + +R+L
Sbjct: 180 KFNAKHGRGKNPQCLVLAPTRELARQVEKEFRESAPSLDTIC--LYGGTPIGQQMRELNY 237
Query: 550 GVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVI 729
G+ V VGTPGR+ D++ R AL+ + ++ VLDEAD+ML GF + + + + L A Q +
Sbjct: 238 GIDVAVGTPGRIIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILQKLPAKRQSM 297
Query: 730 LLSATMPDDVLEVSRCFMRDPV 795
+ SATMP + +++ ++ +P+
Sbjct: 298 MFSATMPSWIRSLTKKYLNNPL 319
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 138 bits (333), Expect = 5e-33
Identities = 73/202 (36%), Positives = 121/202 (59%), Gaps = 6/202 (2%)
Frame = +1
Query: 208 DMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQI- 384
++ + E+++ + + G EK IQ+ + P ++GRD+I +A++GTGKT F I I+ +I
Sbjct: 108 ELGISPEIVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKII 167
Query: 385 -----DTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLES 549
R L+LAPTRELA+Q++K L+ C GGT + + +RQL+
Sbjct: 168 KYNAKHGRGRNPLCLVLAPTRELARQVEKEFRESAPSLDTIC--LYGGTPIGQQMRQLDY 225
Query: 550 GVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVI 729
GV V VGTPGRV D++ R AL+ + ++ VLDEAD+ML GF + + + + L Q +
Sbjct: 226 GVDVAVGTPGRVIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILEKLPEKRQSM 285
Query: 730 LLSATMPDDVLEVSRCFMRDPV 795
+ SATMP + +++ ++ +P+
Sbjct: 286 MFSATMPSWIRSLTKKYLNNPL 307
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 133 bits (321), Expect = 1e-31
Identities = 76/210 (36%), Positives = 110/210 (52%), Gaps = 5/210 (2%)
Frame = +1
Query: 178 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTAT 357
D + ++ F D N + +L I GF +P+ IQ + ++GRD+I A++G+GKT
Sbjct: 159 DVPKPMKMFQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLA 218
Query: 358 FSISILQQIDTSIRECQ-----ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 522
+ + L + R Q LILAPTRELA QIQ+ G + GG
Sbjct: 219 YLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPK 278
Query: 523 REDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFK 702
IR L GV +V+ TPGR+ DM+ + + + VLDEAD ML GF+ QI +
Sbjct: 279 GPQIRDLRRGVEIVIATPGRLIDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVS 338
Query: 703 MLSADVQVILLSATMPDDVLEVSRCFMRDP 792
+ D Q +L SAT P +V ++R F+RDP
Sbjct: 339 QIRPDRQTLLWSATWPREVETLARQFLRDP 368
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 133 bits (321), Expect = 1e-31
Identities = 76/210 (36%), Positives = 110/210 (52%), Gaps = 5/210 (2%)
Frame = +1
Query: 178 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTAT 357
D + ++ F D N + +L I GF +P+ IQ + ++GRD+I A++G+GKT
Sbjct: 159 DVPKPMKMFQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLA 218
Query: 358 FSISILQQIDTSIRECQ-----ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 522
+ + L + R Q LILAPTRELA QIQ+ G + GG
Sbjct: 219 YLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPK 278
Query: 523 REDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFK 702
IR L GV +V+ TPGR+ DM+ + + + VLDEAD ML GF+ QI +
Sbjct: 279 GPQIRDLRRGVEIVIATPGRLIDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVS 338
Query: 703 MLSADVQVILLSATMPDDVLEVSRCFMRDP 792
+ D Q +L SAT P +V ++R F+RDP
Sbjct: 339 QIRPDRQTLLWSATWPREVETLARQFLRDP 368
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 133 bits (321), Expect = 1e-31
Identities = 73/200 (36%), Positives = 116/200 (58%), Gaps = 8/200 (4%)
Frame = +1
Query: 193 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 372
V TF L +LL + G++ P+ IQ +AI + G+ ++A A +G+GKTA+F + I
Sbjct: 109 VLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIPAALTGKSLLASADTGSGKTASFLVPI 168
Query: 373 LQQIDT--------SIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVRE 528
+ + T R A++LAPTREL Q++ LG L K +GG +
Sbjct: 169 ISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQAKMLGKGLPFKTALVVGGDPMSG 228
Query: 529 DIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKML 708
+ +++ GV +++GTPGRV D++++ + + I FVLDE D ML RGF+DQ+ +F+ L
Sbjct: 229 QLYRIQQGVELIIGTPGRVVDLLSKHTIELDNIMTFVLDEVDCMLQRGFRDQVMQIFQAL 288
Query: 709 SADVQVILLSATMPDDVLEV 768
S QV+L SAT+ +V +V
Sbjct: 289 S-QPQVLLFSATISREVEKV 307
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 132 bits (319), Expect = 3e-31
Identities = 74/211 (35%), Positives = 115/211 (54%), Gaps = 5/211 (2%)
Frame = +1
Query: 178 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTAT 357
D + V+TF+D +++ I +EKP+AIQ +A+ + GRDVI A++G+GKTA
Sbjct: 222 DVHRPVKTFEDCGFSSQIMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAA 281
Query: 358 FSISILQQI--DTSIRECQA---LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 522
F + ++ I ++ + +I APTRELA QI + A GG +
Sbjct: 282 FVLPMIVHIMDQPELQRDEGPIGVICAPTRELAHQIFLEAKKFSKAYGLRVSAVYGGMSK 341
Query: 523 REDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFK 702
E ++L++G +VV TPGR+ DM+ +AL VLDEAD M GF+ Q+ +
Sbjct: 342 HEQFKELKAGCEIVVATPGRLIDMLKMKALTMMRASYLVLDEADRMFDLGFEPQVRSIVG 401
Query: 703 MLSADVQVILLSATMPDDVLEVSRCFMRDPV 795
+ D Q +L SATMP V +++R + DP+
Sbjct: 402 QIRPDRQTLLFSATMPWKVEKLAREILSDPI 432
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 132 bits (318), Expect = 3e-31
Identities = 73/217 (33%), Positives = 124/217 (57%), Gaps = 13/217 (5%)
Frame = +1
Query: 184 DQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFS 363
++VV+TF ++ ++EEL++ G++ PS IQ A+ ++G+DVI AQ+G+GKT F+
Sbjct: 5 NEVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFA 64
Query: 364 ISILQQIDTSIRECQ------------ALILAPTRELAQQIQKVVIALGDHLNAKCHACI 507
I ILQ + + + + A +L+PTRELA QI + ALG ++ +C +
Sbjct: 65 IPILQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALGADISLRCAVLV 124
Query: 508 GGTNVREDIRQLESGVHVVVGTPGRVYD-MITRRALHANTIKLFVLDEADEMLSRGFKDQ 684
GG + + L HV+V TPGR++D M + ++K VLDEAD +L+ F+
Sbjct: 125 GGIDRMQQTIALGKRPHVIVATPGRLWDHMSDTKGFSLKSLKYLVLDEADRLLNEDFEKS 184
Query: 685 IHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPV 795
++ + + + + + L SATM V ++ R +R+PV
Sbjct: 185 LNQILEEIPLERKTFLFSATMTKKVRKLQRACLRNPV 221
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 131 bits (317), Expect = 4e-31
Identities = 64/200 (32%), Positives = 116/200 (58%), Gaps = 3/200 (1%)
Frame = +1
Query: 202 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 381
F+ +NL + I G++ P+ IQ++ + + G DV+A A++G+GKTA F I +L++
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLIPMLEK 89
Query: 382 IDTSIRE--CQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGV 555
+ + + +ALIL+PTR+LA+Q K LG + + +GG ++ + +L G
Sbjct: 90 LKQHVPQGGVRALILSPTRDLAEQTLKFTKELGKFTDLRVSLLVGGDSMEDQFEELTKGP 149
Query: 556 HVVVGTPGRVYDMITR-RALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVIL 732
V++ TPGR+ +++ + T++ V DEAD + GF +Q+H + LS + Q +L
Sbjct: 150 DVIIATPGRLMHLLSEVDDMTLRTVEYVVFDEADSLFGMGFAEQLHQILTQLSENRQTLL 209
Query: 733 LSATMPDDVLEVSRCFMRDP 792
SAT+P + E ++ +R+P
Sbjct: 210 FSATLPSALAEFAKAGLREP 229
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 130 bits (313), Expect = 1e-30
Identities = 74/205 (36%), Positives = 120/205 (58%), Gaps = 10/205 (4%)
Frame = +1
Query: 211 MNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQID- 387
++L + L + G IQ+ ++P +QGRD+IA+A++GTGKT F I I++++
Sbjct: 107 LSLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTE 166
Query: 388 -----TSIREC----QALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQ 540
T+ R + L+LAPTRELA+Q++K + +L+ C GG +
Sbjct: 167 EAGDYTAFRRSGRLPKFLVLAPTRELAKQVEKEIKESAPYLSTVC--VYGGVSYTIQQSA 224
Query: 541 LESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADV 720
L GV VVVGTPGR+ D+I R+L ++ VLDEAD+ML+ GF++ + + + L
Sbjct: 225 LTRGVDVVVGTPGRIIDLIEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILENLPTKR 284
Query: 721 QVILLSATMPDDVLEVSRCFMRDPV 795
Q +L SATMP V +++R ++ +P+
Sbjct: 285 QSMLFSATMPTWVKKLARKYLDNPL 309
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 128 bits (310), Expect = 3e-30
Identities = 71/204 (34%), Positives = 115/204 (56%), Gaps = 4/204 (1%)
Frame = +1
Query: 196 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISIL 375
+TF ++NL LLR G++KP+ IQ I + GRD+ A A +G+GKTA F++ L
Sbjct: 167 DTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTL 226
Query: 376 QQI---DTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLE 546
+++ + + LIL PTRELA QI ++ L + KC +GG +VRE L
Sbjct: 227 ERLLFRPKRVFATRVLILTPTRELAVQIHSMIQNLAQFTDIKCGLIVGGLSVREQEVVLR 286
Query: 547 SGVHVVVGTPGRVYDMI-TRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQ 723
S +VV TPGR+ D + ++ + + + +LDEAD +L GF +I ++ ++ Q
Sbjct: 287 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLQTGFATEITELVRLCPKRRQ 346
Query: 724 VILLSATMPDDVLEVSRCFMRDPV 795
+L SATM ++V E+ + + P+
Sbjct: 347 TMLFSATMTEEVKELVKLSLNKPL 370
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 126 bits (304), Expect = 2e-29
Identities = 72/202 (35%), Positives = 108/202 (53%), Gaps = 4/202 (1%)
Frame = +1
Query: 199 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSIS--- 369
+F+ ELLR + + GF P+ IQ ++ +QGRD++A A++G+GKT + I
Sbjct: 159 SFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFL 218
Query: 370 ILQQIDTSIRECQA-LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLE 546
LQ+I R L+L+PTRELA QIQ+ + G C GG +R LE
Sbjct: 219 HLQRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLE 278
Query: 547 SGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQV 726
G +VV TPGR+ D++ R + I VLDEAD ML GF+ QI + K + Q
Sbjct: 279 RGADIVVATPGRLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQT 338
Query: 727 ILLSATMPDDVLEVSRCFMRDP 792
++ +AT P V +++ + +P
Sbjct: 339 LMYTATWPKGVRKIAADLLVNP 360
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 126 bits (304), Expect = 2e-29
Identities = 72/202 (35%), Positives = 108/202 (53%), Gaps = 4/202 (1%)
Frame = +1
Query: 199 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSIS--- 369
+F+ ELLR + + GF P+ IQ ++ +QGRD++A A++G+GKT + I
Sbjct: 159 SFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFL 218
Query: 370 ILQQIDTSIRECQA-LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLE 546
LQ+I R L+L+PTRELA QIQ+ + G C GG +R LE
Sbjct: 219 HLQRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLE 278
Query: 547 SGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQV 726
G +VV TPGR+ D++ R + I VLDEAD ML GF+ QI + K + Q
Sbjct: 279 RGADIVVATPGRLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQT 338
Query: 727 ILLSATMPDDVLEVSRCFMRDP 792
++ +AT P V +++ + +P
Sbjct: 339 LMYTATWPKGVRKIAADLLVNP 360
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 126 bits (304), Expect = 2e-29
Identities = 72/202 (35%), Positives = 108/202 (53%), Gaps = 4/202 (1%)
Frame = +1
Query: 199 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSIS--- 369
+F+ ELLR + + GF P+ IQ ++ +QGRD++A A++G+GKT + I
Sbjct: 159 SFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFL 218
Query: 370 ILQQIDTSIRECQA-LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLE 546
LQ+I R L+L+PTRELA QIQ+ + G C GG +R LE
Sbjct: 219 HLQRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLE 278
Query: 547 SGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQV 726
G +VV TPGR+ D++ R + I VLDEAD ML GF+ QI + K + Q
Sbjct: 279 RGADIVVATPGRLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQT 338
Query: 727 ILLSATMPDDVLEVSRCFMRDP 792
++ +AT P V +++ + +P
Sbjct: 339 LMYTATWPKGVRKIAADLLVNP 360
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 125 bits (302), Expect = 3e-29
Identities = 70/203 (34%), Positives = 108/203 (53%), Gaps = 4/203 (1%)
Frame = +1
Query: 199 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSIS--- 369
TF+ L E+LR + + GF P+ IQ + +Q RD++A A++G+GKT + I
Sbjct: 436 TFESSGLPPEILRELLSAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFI 495
Query: 370 ILQQIDTSIRECQA-LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLE 546
+L+ R LILAPTRELA QIQ + G C GG +++LE
Sbjct: 496 LLRHCRNDSRNGPTVLILAPTRELATQIQDEALRFGRSSRISCTCLYGGAPKGPQLKELE 555
Query: 547 SGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQV 726
G +VV TPGR+ D++ + + + L VLDEAD ML GF+ QI + + Q
Sbjct: 556 RGADIVVATPGRLNDILEMKMIDFQQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQT 615
Query: 727 ILLSATMPDDVLEVSRCFMRDPV 795
++ +AT P +V +++ + +PV
Sbjct: 616 LMYTATWPKEVRKIASDLLVNPV 638
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 123 bits (297), Expect = 1e-28
Identities = 68/210 (32%), Positives = 109/210 (51%), Gaps = 5/210 (2%)
Frame = +1
Query: 178 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTAT 357
D + V++F D+ + +L + GF +P+ IQ + ++GRD+I A++G+GKT +
Sbjct: 93 DIPKPVKSFRDVGFPDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLS 152
Query: 358 FSISILQQIDTSIRECQA-----LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 522
+ + + ++ L+LAPTRELA QIQ+ G K GG
Sbjct: 153 YLLPAIVHVNAQPMLAHGDGPIVLVLAPTRELAVQIQQEASKFGSSSKIKTTCIYGGVPK 212
Query: 523 REDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFK 702
+R L+ GV +V+ TPGR+ DM+ + + VLDEAD ML GF QI +
Sbjct: 213 GPQVRDLQKGVEIVIATPGRLIDMMESNNTNLRRVTYLVLDEADRMLDMGFDPQIRKIVS 272
Query: 703 MLSADVQVILLSATMPDDVLEVSRCFMRDP 792
+ D Q + SAT P +V ++S+ F+ +P
Sbjct: 273 HIRPDRQTLYWSATWPKEVEQLSKKFLYNP 302
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 122 bits (295), Expect = 2e-28
Identities = 76/222 (34%), Positives = 118/222 (53%), Gaps = 17/222 (7%)
Frame = +1
Query: 169 LDTDWDQV---VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSG 339
++T D V V TF +++L E L I + KP+ +Q+ AI ++GRD++A AQ+G
Sbjct: 147 IETSGDNVPPPVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTG 206
Query: 340 TGKTATFSISILQQI--DTSIRECQ--------ALILAPTRELAQQIQKVVIALGDHLNA 489
+GKTA F I+ I D ++ + A+IL+PTRELA QI
Sbjct: 207 SGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDEAKKFSYQTGV 266
Query: 490 KCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSR 669
K GGT + + +R+LE GV ++V TPGR+ D++ R + I+ LDEAD ML
Sbjct: 267 KVVVAYGGTPINQQLRELERGVDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDM 326
Query: 670 GFKDQIHDVFKMLSADV----QVILLSATMPDDVLEVSRCFM 783
GF+ QI + + + Q +L SAT P ++ ++ F+
Sbjct: 327 GFEPQIRKIVEQMDMPPRGVRQTLLFSATFPREIQRLAADFL 368
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 120 bits (290), Expect = 8e-28
Identities = 66/190 (34%), Positives = 104/190 (54%), Gaps = 4/190 (2%)
Frame = +1
Query: 202 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 381
F+ + L E + G KP+ +Q + + GRDV+ AQ+G+GKTA F++ IL +
Sbjct: 60 FEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALPILHR 119
Query: 382 IDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHV 561
+ AL++ PTRELA Q+ + ALG LN +C +GG ++ L S H+
Sbjct: 120 LAEDPYGVFALVVTPTRELAFQLAEQFKALGSCLNLRCSVIVGGMDMLTQTMSLVSRPHI 179
Query: 562 VVGTPGRVYDMITRR----ALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVI 729
V+ TPGR+ ++ + + T K VLDEAD +L GF+D++ +F+ L Q +
Sbjct: 180 VITTPGRIKVLLENNPDVPPVFSRT-KFLVLDEADRVLDVGFQDELRTIFQCLPKSRQTL 238
Query: 730 LLSATMPDDV 759
L SATM ++
Sbjct: 239 LFSATMTSNL 248
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 119 bits (287), Expect = 2e-27
Identities = 78/222 (35%), Positives = 115/222 (51%), Gaps = 17/222 (7%)
Frame = +1
Query: 169 LDTDWDQV---VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSG 339
++T D V V TF +++L E L I + KP+ +Q+ AI GRD++A AQ+G
Sbjct: 134 IETSGDNVPPPVNTFAEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQTG 193
Query: 340 TGKTATFSISILQQI--DTSIRECQ--------ALILAPTRELAQQIQKVVIALGDHLNA 489
+GKTA F I+ I D I + A+IL+PTRELA QI
Sbjct: 194 SGKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVILSPTRELACQIHDEARKFSYQTGV 253
Query: 490 KCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSR 669
K GGT V + IR+LE GV ++V TPGR+ D++ R + ++ LDEAD ML
Sbjct: 254 KVVVAYGGTPVNQQIRELERGVDILVATPGRLNDLLERGRVSLQMVRFLALDEADRMLDM 313
Query: 670 GFKDQIHDVFKMLSADV----QVILLSATMPDDVLEVSRCFM 783
GF+ QI + + + Q +L SAT P ++ ++ F+
Sbjct: 314 GFEPQIRKIVQQMDMPPPGVRQTMLFSATFPREIQRLASDFL 355
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 119 bits (287), Expect = 2e-27
Identities = 75/226 (33%), Positives = 123/226 (54%), Gaps = 25/226 (11%)
Frame = +1
Query: 193 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 372
+ ++++ L ELL+ + G++KPS IQ AI +Q RDVI A++G+GKTA F + +
Sbjct: 312 MRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPM 371
Query: 373 LQQID-----TSIRECQ---ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVRE 528
L I + E + A+++APTRELAQQI++ + +L + + +GG ++ E
Sbjct: 372 LAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEEETVKFAHYLGFRVTSIVGGQSIEE 431
Query: 529 DIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVF-KM 705
++ G +V+ TPGR+ D + RR N VLDEAD M+ GF+ Q+ V M
Sbjct: 432 QGLKITQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVAGVLDAM 491
Query: 706 LSADVQ----------------VILLSATMPDDVLEVSRCFMRDPV 795
S++++ + SATMP V ++R ++R+PV
Sbjct: 492 PSSNLKPENEEEELDEKKIYRTTYMFSATMPPGVERLARKYLRNPV 537
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 118 bits (285), Expect = 3e-27
Identities = 79/252 (31%), Positives = 125/252 (49%), Gaps = 10/252 (3%)
Frame = +1
Query: 67 SSERRSEDWPEDSKNGPSKDQGSYDGPPGMDPGT-LDTDWDQVVETFDDMNLKEELLRGI 243
S + + +D PE +G + + G ++ ++TF + NL E +L
Sbjct: 72 SEKNKKKDVPEKKLEAEDLGEGESEQQKVVVTGKGVEEAKYAALKTFAESNLPENVLDCC 131
Query: 244 YAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIREC------ 405
FEKPS IQ + GRD+I A++G+GKT F I + + ++
Sbjct: 132 KT--FEKPSPIQSHTWPFLLDGRDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKK 189
Query: 406 ---QALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTP 576
L+L+PTRELA QI V+ G+ K GG++ I + SGV +V+GTP
Sbjct: 190 VNPTCLVLSPTRELAVQISDVLREAGEPCGLKSICVYGGSSKGPQISAIRSGVDIVIGTP 249
Query: 577 GRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDD 756
GR+ D+I L + + VLDEAD ML GF++ + + + Q+++ SAT P D
Sbjct: 250 GRLRDLIESNVLRLSDVSFVVLDEADRMLDMGFEEPVRFILSNTNKVRQMVMFSATWPLD 309
Query: 757 VLEVSRCFMRDP 792
V ++++ FM DP
Sbjct: 310 VHKLAQEFM-DP 320
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 118 bits (284), Expect = 4e-27
Identities = 65/190 (34%), Positives = 104/190 (54%), Gaps = 4/190 (2%)
Frame = +1
Query: 235 RGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSIS---ILQQIDTSIREC 405
R +Y+ GF PS IQ ++ +Q RD++A A++G+GKT + I LQ+I R
Sbjct: 242 RMVYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRMG 301
Query: 406 QA-LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGR 582
L+L+PTRELA QIQ + G C GG ++++E GV +VV TPGR
Sbjct: 302 PTILVLSPTRELATQIQVEALKFGKSSKISCACLYGGAPKGPQLKEIERGVDIVVATPGR 361
Query: 583 VYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVL 762
+ D++ + + + + VLDEAD ML GF+ QI + + Q ++ +AT P +V
Sbjct: 362 LNDILEMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPTKRQTLMYTATWPKEVR 421
Query: 763 EVSRCFMRDP 792
+++ + +P
Sbjct: 422 KIAADLLVNP 431
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 118 bits (284), Expect = 4e-27
Identities = 67/165 (40%), Positives = 99/165 (60%), Gaps = 4/165 (2%)
Frame = +1
Query: 313 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NA 489
DVI QA+SG GKTA F +S LQQI+ S + AL+L TRELA QI + +L +
Sbjct: 2 DVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDT 61
Query: 490 KCHACIGGTNVR--EDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 663
K GG N++ +D+ + E H+VVGTPGRV + + L ++ F+LDE D+ML
Sbjct: 62 KVSVFYGGVNIKIHKDLLKNEC-PHIVVGTPGRVLALAREKDLSLKNVRHFILDECDKML 120
Query: 664 -SRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPV 795
S + + ++FKM D QV++ SAT+ ++ V + FM+DP+
Sbjct: 121 ESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPM 165
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 116 bits (280), Expect = 1e-26
Identities = 67/204 (32%), Positives = 112/204 (54%), Gaps = 5/204 (2%)
Frame = +1
Query: 199 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATF---SIS 369
TFD ++L E+ I GF+ + IQ +I P ++G+DV+ A++G+GKT F ++
Sbjct: 90 TFDSLDLSEQTSIAIKEMGFQYMTQIQAGSIQPLLEGKDVLGAARTGSGKTLAFLIPAVE 149
Query: 370 ILQQIDTSIRE-CQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLE 546
+L + S R +++ PTRELA Q + V L H + IGG N R + +++
Sbjct: 150 LLFKERFSPRNGTGVIVICPTRELAIQTKNVAEELLKHHSQTVSMVIGGNNRRSEAQRIA 209
Query: 547 SGVHVVVGTPGRVYDMI-TRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQ 723
SG ++V+ TPGR+ D + +A +K V+DEAD +L F++ ++ + K+L Q
Sbjct: 210 SGSNLVIATPGRLLDHLQNTKAFIYKHLKCLVIDEADRILEENFEEDMNKILKILPKTRQ 269
Query: 724 VILLSATMPDDVLEVSRCFMRDPV 795
L SAT V +++R + PV
Sbjct: 270 TALFSATQTSKVKDLARVSLTSPV 293
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 116 bits (280), Expect = 1e-26
Identities = 63/170 (37%), Positives = 101/170 (59%), Gaps = 8/170 (4%)
Frame = +1
Query: 283 RAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDT--------SIRECQALILAPTREL 438
+AI + G+ ++A A +G+GKTA+F + I+ + T R A++LAPTREL
Sbjct: 2 QAIPAALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTREL 61
Query: 439 AQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHA 618
Q++ LG L K +GG + + +++ GV +++GTPGRV D++++ +
Sbjct: 62 CVQVEDQAKMLGKGLPFKTALVVGGDPMSGQLYRIQQGVELIIGTPGRVVDLLSKHTIEL 121
Query: 619 NTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEV 768
+ I FVLDE D ML RGF+DQ+ +F+ LS QV+L SAT+ +V +V
Sbjct: 122 DNIMTFVLDEVDCMLQRGFRDQVMQIFQALS-QPQVLLFSATISREVEKV 170
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 116 bits (278), Expect = 2e-26
Identities = 73/207 (35%), Positives = 113/207 (54%), Gaps = 10/207 (4%)
Frame = +1
Query: 202 FDDMNLKEELLRGIYA-YGFEKPSAIQQRAIMPCIQG---RDVIAQAQSGTGKTATFSIS 369
F+D+NL EL++G+Y FEKPS IQ ++ P I + +IAQA +G+GKT F +
Sbjct: 93 FEDLNLSPELMKGLYVEMKFEKPSKIQAISL-PMIMTPPHKHLIAQAHNGSGKTTCFVLG 151
Query: 370 ILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGT--NVREDIRQL 543
+L ++D ++RE QAL + PTRELA Q +V+ +G + + R
Sbjct: 152 MLSRVDPTLREPQALCICPTRELANQNMEVLQKMGKFTGITAELAVPDSTRGAPAATRGA 211
Query: 544 ESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSR-GFKDQIHDVFK---MLS 711
HVV+GTPG + + + L N +K+ V DEAD ML+ GF+D + K ++
Sbjct: 212 PVSAHVVIGTPGTLKKWMAFKRLGLNHLKILVFDEADHMLATDGFRDDSLKIMKDIGRVN 271
Query: 712 ADVQVILLSATMPDDVLEVSRCFMRDP 792
+ QV+L SAT + V + ++DP
Sbjct: 272 PNFQVLLFSATFNETVKDFVARTVKDP 298
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 113 bits (273), Expect = 1e-25
Identities = 71/211 (33%), Positives = 108/211 (51%), Gaps = 14/211 (6%)
Frame = +1
Query: 193 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 372
V TF D++L + L I + +P+ +Q+ AI + RD++A AQ+G+GKTA F I
Sbjct: 150 VNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPI 209
Query: 373 LQQI--DTSIRECQ--------ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 522
+ I D + + A+IL+PTRELA QI K GGT +
Sbjct: 210 ISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPI 269
Query: 523 REDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFK 702
+ +R+LE G ++V TPGR+ D++ R + I+ LDEAD ML GF+ QI + +
Sbjct: 270 HQQLRELERGCDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVE 329
Query: 703 MLSADV----QVILLSATMPDDVLEVSRCFM 783
+ Q +L SAT P + ++ FM
Sbjct: 330 QMDMPPRGVRQTMLFSATFPSQIQRLAADFM 360
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 113 bits (273), Expect = 1e-25
Identities = 71/211 (33%), Positives = 108/211 (51%), Gaps = 14/211 (6%)
Frame = +1
Query: 193 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 372
V TF D++L + L I + +P+ +Q+ AI + RD++A AQ+G+GKTA F I
Sbjct: 150 VNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPI 209
Query: 373 LQQI--DTSIRECQ--------ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 522
+ I D + + A+IL+PTRELA QI K GGT +
Sbjct: 210 ISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPI 269
Query: 523 REDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFK 702
+ +R+LE G ++V TPGR+ D++ R + I+ LDEAD ML GF+ QI + +
Sbjct: 270 HQQLRELERGCDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVE 329
Query: 703 MLSADV----QVILLSATMPDDVLEVSRCFM 783
+ Q +L SAT P + ++ FM
Sbjct: 330 QMDMPPRGVRQTMLFSATFPSQIQRLAADFM 360
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 113 bits (272), Expect = 1e-25
Identities = 66/200 (33%), Positives = 112/200 (56%), Gaps = 14/200 (7%)
Frame = +1
Query: 193 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 372
++ F DM LLR + G P+ IQ + + + GRD+I A +G+GKT F + +
Sbjct: 96 IKNFMDMKFPSPLLRMLKDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPM 155
Query: 373 L-----QQIDTSIRECQ---ALILAPTRELAQQ----IQKVVIALGD--HLNAKCHACIG 510
+ ++I I + AL++ P+RELA+Q +++ V +L + + + CIG
Sbjct: 156 IILALQEEIMMPIAAGEGPIALVICPSRELAKQTYDVVEQFVASLVEDGYPRLRSLLCIG 215
Query: 511 GTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIH 690
G ++R + ++ GVH+VV TPGR+ D++ ++ + + +L LDEAD ++ GF+D I
Sbjct: 216 GVDMRSQLDVVKKGVHIVVATPGRLKDILAKKKMSLDACRLLTLDEADRLVDLGFEDDIR 275
Query: 691 DVFKMLSADVQVILLSATMP 750
VF + Q +L SATMP
Sbjct: 276 HVFDHFKSQRQTLLFSATMP 295
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 113 bits (271), Expect = 2e-25
Identities = 67/215 (31%), Positives = 114/215 (53%), Gaps = 14/215 (6%)
Frame = +1
Query: 193 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATF---- 360
++ F DM +L + G +P+ IQ + + + GRD+I A +G+GKT F
Sbjct: 145 IKNFKDMKFPRPVLDTLKEKGIVQPTPIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPM 204
Query: 361 -SISILQQIDTSIRECQA---LILAPTRELAQQIQKVV------IALGDHLNAKCHACIG 510
I++ +++ I + LI+ P+RELA+Q +VV + + + CIG
Sbjct: 205 IMIALQEEMMMPIAAGEGPIGLIVCPSRELARQTYEVVEQFVAPLVEAGYPPLRSLLCIG 264
Query: 511 GTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIH 690
G ++R + ++ GVH+VV TPGR+ DM+ ++ + + + LDEAD ++ GF+D I
Sbjct: 265 GIDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMSLDACRYLTLDEADRLVDLGFEDDIR 324
Query: 691 DVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPV 795
+VF + Q +L SATMP + +R + PV
Sbjct: 325 EVFDHFKSQRQTLLFSATMPTKIQIFARSALVKPV 359
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains Pfam
profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 113 bits (271), Expect = 2e-25
Identities = 68/214 (31%), Positives = 111/214 (51%), Gaps = 8/214 (3%)
Frame = +1
Query: 178 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTAT 357
D + ++ + L ++L + +EKP IQ +A+ + GRD I A++G+GKT
Sbjct: 523 DVPRPIKFWHQTGLTSKILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLG 582
Query: 358 FSISILQQI-DTSIRECQ----ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 522
F + +L+ I D E L++APTREL QQI + L +C GG+ V
Sbjct: 583 FVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIHSDIRKFSKPLGIRCVPVYGGSGV 642
Query: 523 REDIRQLESGVHVVVGTPGRVYDMI---TRRALHANTIKLFVLDEADEMLSRGFKDQIHD 693
+ I +L+ G +VV TPGR+ D++ + + + + V+DEAD M GF+ QI
Sbjct: 643 AQQISELKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITR 702
Query: 694 VFKMLSADVQVILLSATMPDDVLEVSRCFMRDPV 795
+ + + + Q +L SAT P V ++R + PV
Sbjct: 703 IIQNIRPERQTVLFSATFPRQVETLARKVLNKPV 736
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar to
RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 112 bits (269), Expect = 3e-25
Identities = 69/214 (32%), Positives = 110/214 (51%), Gaps = 8/214 (3%)
Frame = +1
Query: 178 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTAT 357
D + ++ + L ++L + +EKP IQ +A+ + GRD I A++G+GKT
Sbjct: 390 DVPRPIQFWHQTGLTSKILDTLKKLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLG 449
Query: 358 FSISILQQI-DTSIRECQ----ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 522
F + +L+ I D E L++APTREL QQI + L C GG+ V
Sbjct: 450 FVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIYSDIRKFSKALGIICVPVYGGSGV 509
Query: 523 REDIRQLESGVHVVVGTPGRVYDMI---TRRALHANTIKLFVLDEADEMLSRGFKDQIHD 693
+ I +L+ G +VV TPGR+ D++ + + + + V+DEAD M GF+ QI
Sbjct: 510 AQQISELKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQITR 569
Query: 694 VFKMLSADVQVILLSATMPDDVLEVSRCFMRDPV 795
+ + + D Q +L SAT P V ++R + PV
Sbjct: 570 IVQNIRPDRQTVLFSATFPRQVETLARKVLNKPV 603
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 105 bits (251), Expect = 4e-23
Identities = 63/216 (29%), Positives = 120/216 (55%), Gaps = 12/216 (5%)
Frame = +1
Query: 184 DQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFS 363
++ ++F+++ L L+R + G EKP+ IQQ AI ++G+DV+A+A++G+GKT +
Sbjct: 42 EEAPKSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEGKDVVARAKTGSGKTLAYL 101
Query: 364 ISILQQI---DTSIRE---CQALILAPTRELAQQIQKVVIALGDHLNAKCHAC-IGGTNV 522
+ +LQ++ D+ ++ A IL P+REL QQ+ V +L + + A + +
Sbjct: 102 LPLLQKLFSADSVSKKKLAPSAFILVPSRELCQQVYTEVSSLIELCRVQLKAVQLTSSMS 161
Query: 523 REDIRQLESGV-HVVVGTPGRVYDMITRRALH----ANTIKLFVLDEADEMLSRGFKDQI 687
D+R +G+ ++V TP + L + ++ + VLDEAD +LS G++D +
Sbjct: 162 ASDMRNALAGLPEILVSTPACIPKCFAAGVLEPTAVSESLSILVLDEADLLLSYGYEDNL 221
Query: 688 HDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPV 795
V ++ Q +L+SAT DV ++ + + +P+
Sbjct: 222 RSVTSIIPRRCQCLLMSATTSSDVEKLKKLILHNPI 257
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 104 bits (250), Expect = 6e-23
Identities = 62/205 (30%), Positives = 106/205 (51%), Gaps = 5/205 (2%)
Frame = +1
Query: 196 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATF---SI 366
+TF+ ++L + + I GF + + IQ +AI P + G DV+ A++G+GKT F ++
Sbjct: 154 KTFESLSLSDNTYKSIKEMGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPAV 213
Query: 367 SILQQIDTSIRE-CQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQL 543
+L ++ + R L++ PTRELA Q V L + + IGG + + L
Sbjct: 214 ELLYRVKFTPRNGTGVLVICPTRELAIQSYGVAKELLKYHSQTVGKVIGGEKRKTEAEIL 273
Query: 544 ESGVHVVVGTPGRVYDMI-TRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADV 720
GV+++V TPGR+ D + +K V+DEAD +L + F++ + + +L
Sbjct: 274 AKGVNLLVATPGRLLDHLENTNGFIFKNLKFLVMDEADRILEQNFEEDLKKILNLLPKTR 333
Query: 721 QVILLSATMPDDVLEVSRCFMRDPV 795
Q L SAT V +++R + PV
Sbjct: 334 QTSLFSATQSAKVEDLARVSLTSPV 358
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 104 bits (249), Expect = 8e-23
Identities = 66/209 (31%), Positives = 108/209 (51%), Gaps = 14/209 (6%)
Frame = +1
Query: 202 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 381
FD+ + L+ + A G K + +Q + C+ G+D + +A++GTGK+ F + ++
Sbjct: 377 FDESCISPLTLKALSASGIVKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIET 436
Query: 382 IDTSIRECQA---------LILAPTRELAQQIQKVVIAL-GDHLNAKCHACIGGTNVRED 531
+ ++ + LIL PTRELA QI AL +H IGGT R D
Sbjct: 437 VLKAMNSGKGVHKVAPIFVLILCPTRELASQIAAEGKALLKNHDGIGVQTLIGGTRFRLD 496
Query: 532 IRQLESG-VHVVVGTPGRVYDMITRRA---LHANTIKLFVLDEADEMLSRGFKDQIHDVF 699
++LES +++ TPGR+ D I ++ +KLF++DEAD +L GFK + +
Sbjct: 497 QQRLESEPCQILIATPGRLLDHIENKSGLTSRLMALKLFIVDEADLLLDLGFKRDVEKII 556
Query: 700 KMLSADVQVILLSATMPDDVLEVSRCFMR 786
L Q +L SAT+P +V VS+ ++
Sbjct: 557 DCLPRQRQSLLFSATIPKEVRRVSQLVLK 585
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 103 bits (248), Expect = 1e-22
Identities = 69/229 (30%), Positives = 119/229 (51%), Gaps = 29/229 (12%)
Frame = +1
Query: 196 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISIL 375
++F+++ L + LL + GF P+ +Q A+ I+G D + Q+ +G+GKT + + IL
Sbjct: 110 KSFEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAVIQSYTGSGKTLAYLLPIL 169
Query: 376 QQI-------------DTSIRECQALILAPTRELAQQI-QKVVIALGDHLNAKCHACIGG 513
+I + E QA+I+AP+REL QI ++V LG +GG
Sbjct: 170 SEIGPLAEKSRSSHSENDKRTEIQAMIVAPSRELGMQIVREVEKLLGPVHRRMVQQLVGG 229
Query: 514 TN-VREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIH 690
N +R++ ++ +VVGTPGR+ ++ LH + + VLDE DE+LS F++ IH
Sbjct: 230 ANRMRQEEALKKNKPAIVVGTPGRIAEISKGGKLHTHGCRFLVLDEVDELLSFNFREDIH 289
Query: 691 DVFKMLS--------------ADVQVILLSATMPDDVLEVSRCFMRDPV 795
+ + + A+ Q IL+SAT+P V+ ++ + +PV
Sbjct: 290 RILEHVGKRSGAGPKGEVDERANRQTILVSATVPFSVIRAAKSWSHEPV 338
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 101 bits (243), Expect = 4e-22
Identities = 64/211 (30%), Positives = 111/211 (52%), Gaps = 16/211 (7%)
Frame = +1
Query: 202 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 381
FD+ + L+ + A G K + +Q + C+ G+D + +A++GTGK+ F + ++
Sbjct: 330 FDESCISPLTLKALSASGILKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIET 389
Query: 382 IDTSIRECQ---------ALILAPTRELAQQIQ---KVVIALGDHLNAKCHACIGGTNVR 525
+ ++ + ALIL PTRELA QI K ++ D + + IGGT +
Sbjct: 390 VLKAMNSGKGVNKVAPIFALILCPTRELASQIAAEGKALLKFHDGIGVQ--TLIGGTRFK 447
Query: 526 EDIRQLESG-VHVVVGTPGRVYDMITRRA---LHANTIKLFVLDEADEMLSRGFKDQIHD 693
D ++LES +++ TPGR+ D I ++ +KLF++DEAD +L GF+ +
Sbjct: 448 LDQQRLESEPCQILIATPGRLLDHIENKSGLTSRLMALKLFIVDEADLLLDLGFRRDVEK 507
Query: 694 VFKMLSADVQVILLSATMPDDVLEVSRCFMR 786
+ L Q +L SAT+P +V VS+ ++
Sbjct: 508 IIDCLPRQRQSLLFSATIPKEVRRVSQLVLK 538
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 101 bits (242), Expect = 6e-22
Identities = 73/250 (29%), Positives = 117/250 (46%), Gaps = 12/250 (4%)
Frame = +1
Query: 73 ERRSEDWPEDSKNGPSKDQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELLRGIYAY 252
+R++ + ++ K+ S ++ + ++ D V F + L + A
Sbjct: 58 KRKASEEEDEVKSDSSSEKKKSSKKVKLGVEDVEVDNPNAVSKF---RISAPLREKLKAN 114
Query: 253 GFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSI----------RE 402
G E IQ + G D++ +A++G GKT F + IL+ + R
Sbjct: 115 GIEALFPIQASTFDMVLDGADLVGRARTGQGKTLAFVLPILESLVNGPAKSKRKMGYGRS 174
Query: 403 CQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGR 582
L+L PTRELA+Q+ A G L GG + +L+ GV +VVGTPGR
Sbjct: 175 PSVLVLLPTRELAKQVAADFDAYGGSLGLSSCCLYGGDSYPVQEGKLKRGVDIVVGTPGR 234
Query: 583 VYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKML--SADVQVILLSATMPDD 756
+ D I R+ L + ++ VLDEADEML GF + + + + S VQ +L SAT+P
Sbjct: 235 IKDHIERQNLDFSYLQFRVLDEADEMLRMGFVEDVELILGKVEDSTKVQTLLFSATLPSW 294
Query: 757 VLEVSRCFMR 786
V +S F++
Sbjct: 295 VKNISNRFLK 304
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 101 bits (241), Expect = 7e-22
Identities = 65/202 (32%), Positives = 105/202 (51%), Gaps = 13/202 (6%)
Frame = +1
Query: 202 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 381
FD L L+GI GF+ + +Q+ + +QG+D++A+A++GTGKT F + ++
Sbjct: 82 FDQFPLSPLTLKGIEDAGFKTMTVVQEATLPLILQGKDILAKAKTGTGKTVAFLLPSIEA 141
Query: 382 I--------DTSIRECQALILAPTRELA-QQIQKVVIALGDHLNAKCHACIGGTNVREDI 534
+ D L++ PTRELA Q + I L H + IGGT + +
Sbjct: 142 VIKAPPASRDNRHPPIIVLVVCPTRELACQAAAEANILLKYHPSIGVQVVIGGTKLPTEQ 201
Query: 535 RQLE-SGVHVVVGTPGRVYDMITRRALHANT---IKLFVLDEADEMLSRGFKDQIHDVFK 702
R+L+ S ++V TPGR+ D I + A +K+ VLDEAD +L GF+ +I +
Sbjct: 202 RRLQKSPCQILVATPGRLKDHIDNTSGFATRLMGVKVLVLDEADHLLDMGFRREIERIIA 261
Query: 703 MLSADVQVILLSATMPDDVLEV 768
+ Q L SAT+ D+V ++
Sbjct: 262 AVPKQRQTFLFSATVSDEVRQI 283
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain;
identical to cDNA DEAD box RNA helicase, RH26 GI:3776024
Length = 850
Score = 100 bits (239), Expect = 1e-21
Identities = 73/247 (29%), Positives = 118/247 (47%), Gaps = 13/247 (5%)
Frame = +1
Query: 67 SSERRSEDWPEDSKNGPSKDQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELLRGIY 246
SS+ E+ K S D P G T D+ + FD L L+ I
Sbjct: 341 SSDEDDENDEPLIKKAASAKAVQTDKPTGEHVKTSDSYLSKT--RFDQFPLSPLSLKAIK 398
Query: 247 AYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQI--------DTSIRE 402
GFE + +Q+ + +QG+DV+A+A++GTGKT F + ++ + D+
Sbjct: 399 DAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASRDSRQPP 458
Query: 403 CQALILAPTRELAQQ-IQKVVIALGDHLNAKCHACIGGTNVREDIRQLESG-VHVVVGTP 576
L++ PTRELA Q + L H + IGGT + + R++++ ++V TP
Sbjct: 459 IIVLVVCPTRELASQAAAEANTLLKYHPSIGVQVVIGGTKLPTEQRRMQTNPCQILVATP 518
Query: 577 GRVYDMITRRALHANT---IKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATM 747
GR+ D I + A +K+ VLDEAD +L GF+ I + + Q L SAT+
Sbjct: 519 GRLKDHIENTSGFATRLMGVKVLVLDEADHLLDMGFRRDIERIIAAVPKQRQTFLFSATV 578
Query: 748 PDDVLEV 768
P++V ++
Sbjct: 579 PEEVRQI 585
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 99.1 bits (236), Expect = 3e-21
Identities = 61/200 (30%), Positives = 103/200 (51%), Gaps = 9/200 (4%)
Frame = +1
Query: 217 LKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSI 396
L E+++ + GFE + +Q I +DV+ A +G+GKT F + ++ I S
Sbjct: 23 LSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSN 82
Query: 397 ------RECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTNVREDIRQLES-G 552
+ +I++PTREL+ QI KV L N +GG V D+ LE G
Sbjct: 83 SYPPKPHQVMGVIISPTRELSAQIHKVAEPFVSTLPNVNSVLLVGGREVEADMNTLEEEG 142
Query: 553 VHVVVGTPGRVYDMITRRA-LHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVI 729
++++GTPGR+ DM+ R L +++ +LDEAD +L GF+ Q++ + L +
Sbjct: 143 ANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRLPKQRRTG 202
Query: 730 LLSATMPDDVLEVSRCFMRD 789
L SAT V ++++ +R+
Sbjct: 203 LFSATQTQAVADLAKAGLRN 222
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 97.5 bits (232), Expect = 9e-21
Identities = 62/208 (29%), Positives = 106/208 (50%), Gaps = 13/208 (6%)
Frame = +1
Query: 202 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 381
FD L L+ I G+E + +Q+ + ++G+DV+A+A++GTGKT F + ++
Sbjct: 56 FDHYPLSPLSLKAIKDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEV 115
Query: 382 I--------DTSIRECQALILAPTRELAQQIQ-KVVIALGDHLNAKCHACIGGTNVREDI 534
+ D AL++ PTRELA Q + L H + IGGT + +
Sbjct: 116 VVKSPPTSPDNKRPPILALVICPTRELANQAATEANTLLKYHPSIGVQVVIGGTRLGLEQ 175
Query: 535 RQLESG-VHVVVGTPGRVYDMITRR---ALHANTIKLFVLDEADEMLSRGFKDQIHDVFK 702
+++++ ++V TPGR+ D I A +K+ VLDEAD +L GF+ I +
Sbjct: 176 KRMQTNPCQILVATPGRLKDHIENTPGFATRLKGVKVLVLDEADHLLDMGFRKDIERIIS 235
Query: 703 MLSADVQVILLSATMPDDVLEVSRCFMR 786
+ + Q L SAT+P++V ++ +R
Sbjct: 236 AVPKERQTFLFSATVPEEVRQICLVALR 263
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 97.1 bits (231), Expect = 1e-20
Identities = 65/222 (29%), Positives = 111/222 (50%), Gaps = 9/222 (4%)
Frame = +1
Query: 154 MDPGTLDTDWDQVVETFDDMN--LKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQ 327
MD +T ++ F ++ L E+++ + GFE + +Q I +DV+
Sbjct: 1 MDSSPPNTIIEEAPPRFSELKPPLSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVD 60
Query: 328 AQSGTGKTATFSISILQQIDTSI------RECQALILAPTRELAQQIQKVVIALGDHLNA 489
A +G+GKT F + ++ I S + +I++PTREL+ QI KV A+ A
Sbjct: 61 AATGSGKTLAFLLPFIEIIRRSNSYPPKPHQVMGVIISPTRELSAQIHKVARAVRLDF-A 119
Query: 490 KCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRA-LHANTIKLFVLDEADEMLS 666
KC N E E G ++++GTPGR+ DM+ R L +++ +LDEAD +L
Sbjct: 120 KCREVEADMNTLE-----EEGANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLD 174
Query: 667 RGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDP 792
GF+ Q++ + L + L SAT V ++++ +R+P
Sbjct: 175 MGFQKQVNYIISRLPKQRRTGLFSATQTQAVADLAKAGLRNP 216
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 95.5 bits (227), Expect = 4e-20
Identities = 61/209 (29%), Positives = 108/209 (51%), Gaps = 11/209 (5%)
Frame = +1
Query: 202 FDDMN--LKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISIL 375
F D+ L +++ + FE + +Q I +DV A +G+GKT F + ++
Sbjct: 16 FSDLEPPLSGDIIEALNQSDFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLV 75
Query: 376 QQIDTSI------RECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTNVREDI 534
+ + S + +I++PTREL+ QI V L N +GG V+ D+
Sbjct: 76 EILRRSTSFPPKPHQVMGVIISPTRELSTQIYNVAQPFVSTLANVNSVLLVGGREVKADM 135
Query: 535 RQLES-GVHVVVGTPGRVYDMITR-RALHANTIKLFVLDEADEMLSRGFKDQIHDVFKML 708
+ +E G +V++GTPGR+ D++ R L +++ +LDEAD +L GF+ Q++ + L
Sbjct: 136 KIIEEEGCNVLIGTPGRLSDIMERMEILDFRNLEILILDEADRLLEMGFQRQVNYIISRL 195
Query: 709 SADVQVILLSATMPDDVLEVSRCFMRDPV 795
+ L SAT + V E+++ +R+PV
Sbjct: 196 PKQRRTGLFSATQTEGVEELAKAGLRNPV 224
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 94.7 bits (225), Expect = 6e-20
Identities = 53/176 (30%), Positives = 90/176 (51%), Gaps = 9/176 (5%)
Frame = +1
Query: 187 QVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSI 366
++VE F ++ L EE++ + E P+ IQ I ++ + V+ + +G+GKT + +
Sbjct: 109 KLVENFQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLL 168
Query: 367 SILQQI---------DTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 519
I+Q + T R + ++L PTREL++Q+ +V ++ H + GG+
Sbjct: 169 PIVQLMREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKSISHHARFRSILVSGGSR 228
Query: 520 VREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQI 687
+R L + + +VVGTPGR+ I + I VLDEAD M RGF +I
Sbjct: 229 IRPQEDSLNNAIDMVVGTPGRILQHIEEGNMVYGDIAYLVLDEADTMFDRGFGPEI 284
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 88.6 bits (210), Expect = 4e-18
Identities = 65/238 (27%), Positives = 115/238 (48%), Gaps = 5/238 (2%)
Frame = +1
Query: 94 PEDSKNGPSKDQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSA 273
P+DSK G S+D + GT+ + + V F + + ++ RG+ + +
Sbjct: 47 PKDSKIGKSEDGKN---------GTVFSRYAGV-RKFAQLPISDKTKRGLKDAKYVDMTD 96
Query: 274 IQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ----ALILAPTRELA 441
+Q AI + GRD++ A++G+GKT F I IL+++ + +I++PTRELA
Sbjct: 97 VQSAAIPHALCGRDILGAARTGSGKTLAFVIPILEKLHRERWSPEDGVGCIIISPTRELA 156
Query: 442 QQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRA-LHA 618
Q V+ +G IGG + ++ ++++V PGR+ +
Sbjct: 157 AQTFGVLNKVGKFHKFSAGLLIGGREGVDVEKERVHEMNILVCAPGRLLQHMDETPNFEC 216
Query: 619 NTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDP 792
+++ +LDEAD +L FK Q+ + L Q +L SAT V +++R +RDP
Sbjct: 217 PQLQILILDEADRVLDSAFKGQLDPIISQLPKHRQTLLFSATQTKKVKDLARLSLRDP 274
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 88.6 bits (210), Expect = 4e-18
Identities = 62/216 (28%), Positives = 109/216 (50%), Gaps = 24/216 (11%)
Frame = +1
Query: 133 SYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI-MPCIQG 309
S DG ++ + + + M L L++ IY F++P+ IQ+ + QG
Sbjct: 169 SCDGDDTVEEQVEEEEIPPEFSAWSSMRLHPLLMKSIYRLDFKEPTKIQKACFNVAAYQG 228
Query: 310 RDVIAQAQSGTGKTATFSISILQQI-DTSIR----------ECQ---------ALILAPT 429
+DVI A++G+GKT F + ILQ++ D + E Q ALI+ PT
Sbjct: 229 KDVIGAAETGSGKTLAFGLPILQRLLDEREKVGKLYALKGEEAQKYAADGYLRALIITPT 288
Query: 430 RELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMIT--- 600
RELA Q+ + + +L+ K +GG + R+L+ +VV TPGR++++++
Sbjct: 289 RELALQVTEHLENAAKNLSVKVVPIVGGMFSEKQERRLKEKPEIVVATPGRLWELMSAGE 348
Query: 601 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKML 708
+ + +++ FVLDEAD M+ RG ++ + +L
Sbjct: 349 KHLVELHSLSFFVLDEADRMVERGHFRELQSILDLL 384
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 85.4 bits (202), Expect = 4e-17
Identities = 59/206 (28%), Positives = 104/206 (50%), Gaps = 25/206 (12%)
Frame = +1
Query: 253 GFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ------AL 414
GFE P+ +Q +AI + GRDV+ A +GTGKT + ++ + + AL
Sbjct: 49 GFEAPTLVQAQAIPVILSGRDVLVNAPTGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFAL 108
Query: 415 ILAPTRELAQQIQKVVIALGDHLNAKCHACI-GGTNVREDIRQLESGVHVVVGTPGRVYD 591
++ PTREL Q+ + + L + + GG ++ +L G+ +++ TPGR+ D
Sbjct: 109 VIVPTRELCLQVYETLEKLLHRFHWIVPGYVMGGEKKAKEKARLRKGISILIATPGRLLD 168
Query: 592 MITRRA--LHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSA---------DV------ 720
+ A +H N ++ + DEAD +L G+ +I + K+L + D+
Sbjct: 169 HLKNTASFVHKN-LRWVIFDEADSILELGYGKEIEQIIKLLGSGQNEQGEEDDIVPKGIQ 227
Query: 721 -QVILLSATMPDDVLEVSRCFMRDPV 795
Q +LLSAT+ D V ++++ + DPV
Sbjct: 228 KQNLLLSATLNDKVNDLAKLSLDDPV 253
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 83.8 bits (198), Expect = 1e-16
Identities = 50/199 (25%), Positives = 97/199 (48%), Gaps = 11/199 (5%)
Frame = +1
Query: 196 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISIL 375
+TF ++ E++++ + F++P+ IQ A P I G+ I QSG+GKT + + ++
Sbjct: 374 KTFAEIGCSEDMMKALKEQNFDRPAHIQAMAFSPVIDGKSCIIADQSGSGKTLAYLVPVI 433
Query: 376 QQI--------DTSIREC-QALILAPTRELAQQIQKVVIALG-DHLNAKCHACIGGTNVR 525
Q++ S C + ++L PT ELA Q+ ++ + + GG R
Sbjct: 434 QRLREEELQGHSKSSPGCPRVIVLVPTAELASQVLANCRSISKSGVPFRSMVVTGGFRQR 493
Query: 526 EDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRG-FKDQIHDVFK 702
+ LE GV V++ TPGR ++ L + ++ +LDE D + F+ + ++
Sbjct: 494 TQLENLEQGVDVLIATPGRFTYLMNEGILGLSNLRCAILDEVDILFGDDEFEAALQNLIN 553
Query: 703 MLSADVQVILLSATMPDDV 759
Q + ++AT+P ++
Sbjct: 554 SSPVTAQYLFVTATLPLEI 572
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 81.4 bits (192), Expect = 6e-16
Identities = 60/191 (31%), Positives = 95/191 (49%), Gaps = 2/191 (1%)
Frame = +1
Query: 229 LLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQID-TSIREC 405
+LR + GF++P+ IQ++AI + GR+ A A +G+GKT F +L ++ S
Sbjct: 152 ILRNLAELGFKEPTPIQRQAIPILLSGRECFACAPTGSGKTFAFICPMLIKLKRPSTDGI 211
Query: 406 QALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRV 585
+A+IL+P RELA Q + L N D +L V++ TP R+
Sbjct: 212 RAVILSPARELAAQTAREGKKLIKGSNFHIRLMTKPLVKTADFSKL--WCDVLISTPMRL 269
Query: 586 YDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLS-ADVQVILLSATMPDDVL 762
I + + + ++ VLDE+D++ + QI V K S + L SAT+PD V
Sbjct: 270 KRAIKAKKIDLSKVEYLVLDESDKLFEQSLLKQIDCVVKACSNPSIIRSLFSATLPDSVE 329
Query: 763 EVSRCFMRDPV 795
E++R M D V
Sbjct: 330 ELARSIMHDAV 340
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 73.7 bits (173), Expect = 1e-13
Identities = 58/199 (29%), Positives = 97/199 (48%), Gaps = 11/199 (5%)
Frame = +1
Query: 223 EELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRE 402
E +L + GF P+ IQ+ A+ GRD I AQ+G+GKT T+ + I I+
Sbjct: 85 EHILHRMEEIGFVFPTDIQREALPTLFTGRDCILHAQTGSGKTLTYLLLIFSLINPQRSS 144
Query: 403 CQALILAPTRELAQQIQKV--VIALGDHLNAK-C--HACIGGTNVREDIRQLES-GVHVV 564
QA+I+ PTREL Q+ KV ++A ++ K C A + G +R L++ ++
Sbjct: 145 VQAVIVVPTRELGMQVTKVARMLAAKSEIDVKGCTVMALLDGGTLRRHKSWLKAEPPAIL 204
Query: 565 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKML----SADV-QVI 729
V T + M+ + +++++ V+DE D + Q+ V K+L S D Q +
Sbjct: 205 VATVASLCHMLEKHIFRIDSVRVLVVDEVDFLFYS--SKQVGSVRKLLTSFSSCDKRQTV 262
Query: 730 LLSATMPDDVLEVSRCFMR 786
SA++P V C +
Sbjct: 263 FASASIPQHKHFVHDCIQQ 281
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 58.8 bits (136), Expect = 4e-09
Identities = 42/168 (25%), Positives = 81/168 (48%), Gaps = 23/168 (13%)
Frame = +1
Query: 271 AIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQI-DTSIRECQALILAPTRELAQQ 447
A+ I P RD+ + +G+GKT ++++ I+Q + +R +AL++ PTR+LA Q
Sbjct: 50 AVWHETIGPGGFERDICVNSPTGSGKTLSYALPIVQLLASRPVRCLRALVVLPTRDLALQ 109
Query: 448 IQKVVIALGDHLNAKCHACIGGTNVREDIRQ---------------------LESGVHVV 564
++ V A+ + + +G +++ +I Q LES V ++
Sbjct: 110 VKDVFDAIAPAVGLSVGSAVGQSSIAGEISQLIKTPKLDAGICYDPDDLSQNLESAVDIL 169
Query: 565 VGTPGRVYDMITR-RALHANTIKLFVLDEADEMLSRGFKDQIHDVFKM 705
V TPGR+ D I + ++ V+DE D +L ++ + V ++
Sbjct: 170 VATPGRLMDHINNTKGFTLEHLRYLVVDETDRLLREAYQSWLPTVLQL 217
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 52.4 bits (120), Expect = 3e-07
Identities = 50/203 (24%), Positives = 87/203 (42%), Gaps = 21/203 (10%)
Frame = +1
Query: 172 DTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKT 351
DT + ++ + L + + + GF++PS Q I + G+DVI A++G+GKT
Sbjct: 72 DTFFADHTVSWKSLGLSDNVSIALRDSGFDRPSLTQAVCIPSILSGKDVIVAAETGSGKT 131
Query: 352 ATFSISILQQIDTSIRECQ--------------ALILAPTRELAQQIQKVVIALGDHLN- 486
+ I+ Q+ + + + +LIL P L +Q+ ++V L D
Sbjct: 132 HGYLAPIIDQLTNTALDSEVTNREERPFPLKNISLILCPNVMLCEQVVRMVNGLVDEDGN 191
Query: 487 --AKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMI----TRRALHANTIKLFVLDE 648
+ A G + + ++V TP + + I RR +K V DE
Sbjct: 192 PLLRVEAVCGSQGWPDRLPD------IIVSTPAALLNNIEPKRNRRLEFLRCVKYVVFDE 245
Query: 649 ADEMLSRGFKDQIHDVFKMLSAD 717
AD +L F++QI + ML D
Sbjct: 246 ADMLLCGSFQNQIIRLINMLRFD 268
>At2g28600.1 68415.m03476 expressed protein
Length = 502
Score = 42.7 bits (96), Expect = 3e-04
Identities = 27/125 (21%), Positives = 60/125 (48%), Gaps = 1/125 (0%)
Frame = +1
Query: 412 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLES-GVHVVVGTPGRVY 588
L L P++ A Q++ V AL + + G + I L+S +V TP R+
Sbjct: 200 LYLVPSQSKASQVRSVCKALKG-IGIHTVSLHQGAPLDHQISGLKSVEPEFIVATPERLL 258
Query: 589 DMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEV 768
+++T + + + + L V+DE + S G+ + + + + +S+ Q I+ + + ++
Sbjct: 259 EIVTLKGVDISNVSLLVIDELGSLCSGGYLNAVKSIKQAISSKHQTIVFNNSFSASIIPA 318
Query: 769 SRCFM 783
+ F+
Sbjct: 319 VQSFL 323
>At4g35740.1 68417.m05072 DNA helicase (RECQl3) identical to DNA
Helicase [Arabidopsis thaliana] GI:11121447; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 713
Score = 32.7 bits (71), Expect = 0.29
Identities = 51/189 (26%), Positives = 86/189 (45%), Gaps = 14/189 (7%)
Frame = +1
Query: 220 KEELLRGI-YAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSI 396
KE L++ + + +G Q AI + GRD +G GK SI QI
Sbjct: 21 KEALVKLLRWHFGHADFRGKQLEAIQAVVSGRDCFCLMPTGGGK------SICYQIPALA 74
Query: 397 RECQALILAPTRELAQQIQKVVIALGDH-LNAKCHACIGGTNVREDIRQ-LESG---VHV 561
+ L+++P L ++ V+AL + + A+ + T+V+ I + L+SG V +
Sbjct: 75 KPGIVLVVSP---LIALMENQVMALKEKGIAAEYLSSTQATHVKNKIHEDLDSGKPSVRL 131
Query: 562 VVGTPGRVYD---MITRRALHA-NTIKLFVLDEADEMLSRG--FKDQIHDVFKMLS--AD 717
+ TP + M+ R LH+ + L +DEA + S G F+ + + AD
Sbjct: 132 LYVTPELIATKGFMLKLRKLHSRGLLNLIAIDEAHCISSWGHDFRPSYRQLSTLRDSLAD 191
Query: 718 VQVILLSAT 744
V V+ L+AT
Sbjct: 192 VPVLALTAT 200
>At3g10020.1 68416.m01202 expressed protein
Length = 149
Score = 32.7 bits (71), Expect = 0.29
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Frame = +1
Query: 112 GPSK--DQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQR 285
GP + D PP MD G + D +QV ++ DD+ + EL++G E P+ + +
Sbjct: 83 GPDRMEDYEMQPDPPAMDEGDPNYDEEQVKKSGDDVAV--ELVKGEVEVAKEAPAGVARV 140
Query: 286 AIMPCIQGR 312
+ P + GR
Sbjct: 141 EVDPRLVGR 149
>At2g04620.1 68415.m00470 cation efflux family protein potential
member of the cation diffusion facilitator (CDF) family,
or cation efflux (CE) family, see PMID:11500563
Length = 798
Score = 32.7 bits (71), Expect = 0.29
Identities = 17/49 (34%), Positives = 21/49 (42%)
Frame = -1
Query: 616 HEAHDELSYHIHDLECPPPHEHHSPVGEYLHGHWCHQCKHGI*HSSDHQ 470
H+ H H H+ EC H+H H H +C H H SDHQ
Sbjct: 597 HDHHHHSHSHKHE-ECNHNHDHE----HQSHSHNHEECNHNHDHHSDHQ 640
Score = 28.3 bits (60), Expect = 6.2
Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Frame = -1
Query: 616 HEAHDELS-YHIHDLECPPPHEHHSPVGEYLHGHWCHQCKHGI*HSSDHQELS 461
HE H + S H H+ H HHS H H +C H H +HQ S
Sbjct: 579 HEEHHQHSDSHKHEEHHEHDHHHHS------HSHKHEECNHN--HDHEHQSHS 623
>At2g42580.1 68415.m05269 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515 TPR Domain
Length = 691
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/53 (26%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Frame = +1
Query: 361 SISILQQIDTSIREC-QALILAPTRELA-QQIQKVVIALGDHLNAKCHACIGG 513
+++ L+++ +++EC +A+ + P+ A Q++ + + LG+ NA+ H C G
Sbjct: 263 ALTALRRLGEAVKECLEAVRIDPSYSRAHQRLASLYLRLGEAENARRHICFSG 315
>At1g31360.1 68414.m03838 DNA helicase, putative (RECQl2) nearly
identical to DNA Helicase [Arabidopsis thaliana]
GI:11121445
Length = 705
Score = 30.3 bits (65), Expect = 1.5
Identities = 22/75 (29%), Positives = 34/75 (45%)
Frame = +1
Query: 250 YGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPT 429
+G K A Q+ I + GRDV+ +G GK S+ Q+ +R L+++P
Sbjct: 85 FGISKYRANQKEIINAIMTGRDVLVIMAAGGGK------SLCYQLPAMLRGGTTLVVSPL 138
Query: 430 RELAQQIQKVVIALG 474
L Q + ALG
Sbjct: 139 LSLIQDQVMGLAALG 153
>At4g14365.1 68417.m02213 zinc finger (C3HC4-type RING finger)
family protein / ankyrin repeat family protein contains
Pfam profile: PF00097 zinc finger, C3HC4 type (RING
finger) and Pfam profile: PF00023 ankyrin repeat
Length = 376
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 412 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGT 516
LILA T + + K ++ LG ++NA C GGT
Sbjct: 46 LILACTNDDLYDVAKTLLELGSNVNAYRSGCNGGT 80
>At4g17920.1 68417.m02670 zinc finger (C3HC4-type RING finger)
family protein similar to RING-H2 zinc finger protein
ATL6 [Arabidopsis thaliana] GI:4928403; contains Pfam
profile PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 289
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = -1
Query: 670 LWTTFHQLHQEQKV*WCWHEAHDELSYHIHDLECPPPHEHHSP 542
L T +H HQE W E+H DL+ PPP E+ P
Sbjct: 126 LTTCYHVFHQECID--LWFESHRTCPVCRRDLDPPPPPENTKP 166
>At3g49970.1 68416.m05464 phototropic-responsive protein, putative
similar to root phototropism RPT2 [Arabidopsis thaliana]
gi|6959488|gb|AAF33112, a signal transducer of
phototropic response PMID:10662859
Length = 526
Score = 28.7 bits (61), Expect = 4.7
Identities = 9/34 (26%), Positives = 22/34 (64%)
Frame = -2
Query: 318 NIASLDARHYCALLDCRRFFKTIGVYASQQFFFE 217
NI+ ++ + C+L+DC++ + + +A+Q F+
Sbjct: 373 NISEVEKKKVCSLMDCKKLSRDVYAHAAQNDRFQ 406
>At1g15140.3 68414.m01810 oxidoreductase NAD-binding
domain-containing protein Contains Pfam profile PF00175:
Oxidoreductase NAD-binding domain; ESTs gb|H76345 and
gb|AA651465 come from this gene
Length = 271
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = -3
Query: 716 SADNILKTSWIWSLKPLDNISSASSRTKSLMVLA*SARRVIISYTRPG 573
SA + + + +W+ PL I SA+ + + +A ++ SYTRPG
Sbjct: 47 SAAAVRQDASLWTPAPLSLIESAAESLFHISIDISNAPDLVASYTRPG 94
>At1g15140.2 68414.m01809 oxidoreductase NAD-binding
domain-containing protein Contains Pfam profile PF00175:
Oxidoreductase NAD-binding domain; ESTs gb|H76345 and
gb|AA651465 come from this gene
Length = 271
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = -3
Query: 716 SADNILKTSWIWSLKPLDNISSASSRTKSLMVLA*SARRVIISYTRPG 573
SA + + + +W+ PL I SA+ + + +A ++ SYTRPG
Sbjct: 47 SAAAVRQDASLWTPAPLSLIESAAESLFHISIDISNAPDLVASYTRPG 94
>At1g15140.1 68414.m01808 oxidoreductase NAD-binding
domain-containing protein Contains Pfam profile PF00175:
Oxidoreductase NAD-binding domain; ESTs gb|H76345 and
gb|AA651465 come from this gene
Length = 295
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = -3
Query: 716 SADNILKTSWIWSLKPLDNISSASSRTKSLMVLA*SARRVIISYTRPG 573
SA + + + +W+ PL I SA+ + + +A ++ SYTRPG
Sbjct: 47 SAAAVRQDASLWTPAPLSLIESAAESLFHISIDISNAPDLVASYTRPG 94
>At4g08990.1 68417.m01485 DNA (cytosine-5-)-methyltransferase,
putative strong similarity to cytosine-5
methyltransferase (METII) [Arabidopsis thaliana]
GI:6523846; contains Pfam profiles PF01426: BAH domain,
PF00145: C-5 cytosine-specific DNA methylase
Length = 1512
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 457 VVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVG 570
V+++L DH ++K H + +R D QL H+V G
Sbjct: 250 VLVSLRDHESSKIHKALSNVALRIDESQLVKSDHLVDG 287
>At2g24020.1 68415.m02869 expressed protein contains Pfam domain
PF02575: Uncharacterized BCR, YbaB family COG0718
Length = 182
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Frame = +1
Query: 31 FPFSYCG*NMSYSSERRSEDWPED--SKNG 114
FPFS+ N S +S+RR+ WP+ SKNG
Sbjct: 16 FPFSHVSGNASLNSQRRT--WPKQYKSKNG 43
>At4g14090.1 68417.m02175 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase ;similar
to UDP-glucose:anthocyanin 5-O-glucosyltransferase
GI:4115563 from [Verbena x hybrida]
Length = 456
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -2
Query: 594 HIIYTTWSAHHHMNTTLQLANIFTDIGAT 508
H + T+ A H+N LQLAN GAT
Sbjct: 13 HYLLVTFPAQGHINPALQLANRLIHHGAT 41
>At3g58620.1 68416.m06533 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515 TPR Domain
Length = 682
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/47 (27%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Frame = +1
Query: 379 QIDTSIREC-QALILAPTRELA-QQIQKVVIALGDHLNAKCHACIGG 513
+++ +++EC +A+ P+ A Q++ + + LG+ NA+ H C+ G
Sbjct: 260 RLEEAVKECLEAVRCDPSYARAHQRLASLYLRLGEAENARRHLCVSG 306
>At2g43110.1 68415.m05352 expressed protein
Length = 288
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +1
Query: 520 VREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLD 645
V E + L+ V++ GTP R+ ++ AL + + + V+D
Sbjct: 191 VEEQVSLLKKRVNIGSGTPNRIKKLVDIEALGLSRLDMIVID 232
>At1g76010.1 68414.m08825 expressed protein
Length = 350
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Frame = +1
Query: 67 SSERRSEDWPEDSK---NGPSKDQGSYDGPPGMDPG 165
S R D P + +GPS+ +G YDGP G G
Sbjct: 282 SQGRGGYDGPSQGRGGYDGPSQGRGGYDGPQGRGRG 317
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,609,439
Number of Sequences: 28952
Number of extensions: 435476
Number of successful extensions: 1491
Number of sequences better than 10.0: 82
Number of HSP's better than 10.0 without gapping: 1312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1401
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1794809600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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