Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0538
         (758 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    28   1.3  
SPBC1A4.01 |apc10|SPBC1E8.06|anaphase-promoting complex subunit ...    26   6.7  
SPBC211.06 |gfh1||gamma tubulin complex subunit Gfh1|Schizosacch...    25   8.9  

>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transporter
            Bfr1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1530

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 268  GFYFYNTGLGQNEVLDLVISVYM*VCMAI 182
            GF FYN GLG   + + + +V+M   +A+
Sbjct: 1236 GFTFYNQGLGVQNIQNKLFAVFMATVLAV 1264


>SPBC1A4.01 |apc10|SPBC1E8.06|anaphase-promoting complex subunit
           Apc10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 189

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 518 HLIFIKKKNCFY*SMYFYFTYPDVYT 595
           H+ F+K+ +  Y SMY  +T  + YT
Sbjct: 66  HIKFVKRVSIKYVSMYLQYTLDESYT 91


>SPBC211.06 |gfh1||gamma tubulin complex subunit
           Gfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 577

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -3

Query: 684 SLLSVKLFLYLAAFNQVFDFI 622
           +L+S K+   LA+F+Q+FD +
Sbjct: 275 TLVSEKIIFQLASFHQIFDLV 295


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,812,876
Number of Sequences: 5004
Number of extensions: 56984
Number of successful extensions: 127
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)