Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0538
         (758 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37225| Best HMM Match : LRR_1 (HMM E-Value=2.6e-11)                 29   5.4  
SB_43258| Best HMM Match : BacA (HMM E-Value=1.8)                      28   9.5  

>SB_37225| Best HMM Match : LRR_1 (HMM E-Value=2.6e-11)
          Length = 497

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 430 ELLFINNASINFKLIYILDRYLKHNTN 510
           E L +NN ++   ++  LD Y+KHN N
Sbjct: 364 EELHLNNITVGKGVLEFLDEYMKHNPN 390


>SB_43258| Best HMM Match : BacA (HMM E-Value=1.8)
          Length = 215

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 495 KAQHKRGHILFLLKRKIAFTKVCIFILH-IPMSTRHT 602
           KA H  GHIL  L   + FT + I++   + +S RHT
Sbjct: 27  KASHGVGHILNDLVSSVWFTYLIIYLTKVVQLSNRHT 63


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,810,064
Number of Sequences: 59808
Number of extensions: 373531
Number of successful extensions: 997
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 997
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)