Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0538
         (758 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g48920.1 68416.m05344 myb family transcription factor (MYB45)...    29   4.4  
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)...    28   7.7  
At2g21260.1 68415.m02530 mannose 6-phosphate reductase (NADPH-de...    28   7.7  

>At3g48920.1 68416.m05344 myb family transcription factor (MYB45)
           similar to MybHv33 GI:456214 from [Hordeum vulgare];
           contains PFAM profile: myb DNA binding domain PF00249
          Length = 261

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +1

Query: 181 QSPYKLTYIQKLLNPILHSDLAPCYKNKNHNDSL 282
           QSP K +Y+Q L+ P     + PC      NDSL
Sbjct: 187 QSPQKSSYVQNLVLPEERGFIGPCGPRYLGNDSL 220


>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
           identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
          Length = 626

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = +3

Query: 498 AQHKRGHILFLLKRKIAFTKVCIFILHIPMSTR 596
           AQ K  HIL LLK ++   K+ IFI  I M  R
Sbjct: 284 AQDKLLHILALLKLEVVQKKILIFINTIDMGFR 316


>At2g21260.1 68415.m02530 mannose 6-phosphate reductase
           (NADPH-dependent), putative similar to NADPH-dependent
           mannose 6-phosphate reductase [Apium
           graveolens][GI:1835701], NADP-dependent
           D-sorbitol-6-phosphate dehydrogenase [Malus
           domestica][SP|P28475]
          Length = 309

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/33 (33%), Positives = 22/33 (66%), Gaps = 3/33 (9%)
 Frame = +3

Query: 513 GHILFLLK---RKIAFTKVCIFILHIPMSTRHT 602
           GH++   K   +K+    + +F++HIP++T+HT
Sbjct: 83  GHVIEACKDSLKKLQLDYLDLFLVHIPIATKHT 115


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,793,195
Number of Sequences: 28952
Number of extensions: 260947
Number of successful extensions: 506
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 506
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)