Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0537
         (803 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    25   1.1  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   2.5  
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               22   7.7  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 31  RFKPYHYIYVLNYIYQDYRQSHG 99
           RF PY+ + + N  Y  ++Q HG
Sbjct: 79  RFPPYNRMDMRNATYYQHQQDHG 101


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 6/19 (31%), Positives = 15/19 (78%)
 Frame = +2

Query: 689 INYKYYHYIFNLISNLKKK 745
           ++ ++Y+ ++ LI N+KK+
Sbjct: 554 VSLRFYNVVYKLIDNIKKE 572


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +2

Query: 653 KTLCLKCFVNIEINYKYYHYIFNLISNLKKKTLSNQQ 763
           K L  + F    I+Y  +H    +ISN    T S ++
Sbjct: 110 KCLTAQKFSRCVIDYVKFHITQYMISNANSNTTSEEE 146


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,007
Number of Sequences: 438
Number of extensions: 4025
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25489170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)