Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0535
         (354 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    21   3.7  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    21   4.9  
AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory recept...    20   6.5  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    20   8.6  

>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 21.0 bits (42), Expect = 3.7
 Identities = 6/23 (26%), Positives = 13/23 (56%)
 Frame = +2

Query: 251 PNFFVRHSETIIINIARPNLKLW 319
           P+ F+R    + IN+    +++W
Sbjct: 152 PDIFMREEVAVKINLPESRVQVW 174


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 20.6 bits (41), Expect = 4.9
 Identities = 6/23 (26%), Positives = 13/23 (56%)
 Frame = +2

Query: 251 PNFFVRHSETIIINIARPNLKLW 319
           P+ F+R    + IN+    +++W
Sbjct: 94  PDIFMREEVALKINLPESRVQVW 116


>AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory receptor
           candidate 35 protein.
          Length = 251

 Score = 20.2 bits (40), Expect = 6.5
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = +3

Query: 15  RKNIFIIAIPMKILNNTISSLTSCNCEFRSLKSL 116
           + NIFI+   +   N+    +  CN    + KSL
Sbjct: 99  KSNIFILKESVDTFNDIFGWIILCNIFEAAAKSL 132


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 19.8 bits (39), Expect = 8.6
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +1

Query: 82  HVIVNLDLLNHSEIQ 126
           H +VN   LNH E++
Sbjct: 260 HHLVNPQSLNHQEVK 274


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,301
Number of Sequences: 336
Number of extensions: 1370
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  7087595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)