Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0535
         (354 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0557 - 24955837-24956214,24957225-24957395,24957576-249576...    27   4.2  
11_06_0545 + 24839536-24843421,24843871-24844310                       27   5.6  
01_01_0629 - 4738519-4738607,4738700-4738828,4738921-4739011,473...    26   7.4  
06_01_0936 - 7220333-7220508,7221208-7221327,7221898-7223089           26   9.8  
06_01_0335 + 2412766-2415655,2416108-2416208,2416871-2416895,241...    26   9.8  
01_01_0588 + 4372877-4372949,4374328-4376262,4376940-4377015,437...    26   9.8  

>11_06_0557 - 24955837-24956214,24957225-24957395,24957576-24957635,
            24958419-24958623,24958710-24958953,24959103-24959394,
            24959734-24960828,24960915-24961409,24961665-24961823,
            24961893-24962387
          Length = 1197

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -3

Query: 307  IRTGDINDNCFTVSNEEIRLLPNKIYWLD 221
            I  G++   CF +S     L P ++YW D
Sbjct: 1095 IEDGNVMVGCFRLSYNYFYLKPGEVYWYD 1123


>11_06_0545 + 24839536-24843421,24843871-24844310
          Length = 1441

 Score = 26.6 bits (56), Expect = 5.6
 Identities = 9/33 (27%), Positives = 20/33 (60%)
 Frame = +1

Query: 130 ILIHSYFTEHQRAEPTLSH*FASINYKQSINQA 228
           + +H+ +  HQR++P L +   S+N   +++ A
Sbjct: 688 MFLHALYANHQRSKPELENLLLSLNEFSTVSNA 720


>01_01_0629 -
           4738519-4738607,4738700-4738828,4738921-4739011,
           4739103-4739177,4739529-4739618,4739742-4739840,
           4739934-4739987,4740084-4740131,4740232-4740330,
           4740458-4740541,4740650-4740721,4740812-4740907,
           4741012-4741077,4741148-4741253,4741350-4741501,
           4741634-4741708,4741792-4741912,4742968-4743209,
           4743328-4743381
          Length = 613

 Score = 26.2 bits (55), Expect = 7.4
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 102 SLKSLGNSSDPHTQLFYGTSKS*TNIIALICV 197
           SLK +G +   HT LF G  ++ T I  LI +
Sbjct: 369 SLKVVGGTLAEHTYLFLGAGEAGTGIAELIAL 400


>06_01_0936 - 7220333-7220508,7221208-7221327,7221898-7223089
          Length = 495

 Score = 25.8 bits (54), Expect = 9.8
 Identities = 12/27 (44%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
 Frame = +3

Query: 51  ILNNTISSLTSCNCEFRSLKSL-GNSS 128
           I++ TISS +S +C ++ + +L GNSS
Sbjct: 9   IISQTISSSSSSSCHYQCIATLSGNSS 35


>06_01_0335 +
           2412766-2415655,2416108-2416208,2416871-2416895,
           2416977-2417049,2417191-2417373,2418164-2418227,
           2418427-2418447,2418862-2418905,2420575-2420650,
           2421359-2421373
          Length = 1163

 Score = 25.8 bits (54), Expect = 9.8
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = +3

Query: 45  MKILNNTISSLTSCNCEFRSLKSLGNSSDPHTQLFYGTSKS*TNIIALICV 197
           + I N  I+SL +  CE RSL  L  +   + + F+  SK    + AL C+
Sbjct: 600 LDISNTCITSLPTEICELRSLNILRCTRKEYYE-FFDPSKPIQCLFALSCI 649


>01_01_0588 +
           4372877-4372949,4374328-4376262,4376940-4377015,
           4378900-4378970,4379038-4379144,4379241-4379711,
           4379791-4379976,4380132-4380425,4380820-4381434,
           4382219-4382615,4382768-4382850,4383397-4383567,
           4384046-4384243,4384754-4385314,4385401-4385460,
           4385553-4385869,4385980-4386403,4386539-4387006,
           4387093-4387209,4387306-4387427,4387506-4388247,
           4388453-4388485,4388625-4388879,4388975-4389160,
           4390115-4390453,4391293-4392045
          Length = 3017

 Score = 25.8 bits (54), Expect = 9.8
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 54  LNNTISSLTSCNCEFRSLKSLGNSS 128
           L +  ++ TSCNC++  LK L +SS
Sbjct: 213 LGHVPTTETSCNCQWECLKVLPSSS 237


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,232,350
Number of Sequences: 37544
Number of extensions: 112325
Number of successful extensions: 220
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 530315984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)