Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0535
         (354 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g56370.1 68416.m06269 leucine-rich repeat transmembrane prote...    29   1.2  
At5g23510.1 68418.m02758 expressed protein                             26   6.3  
At3g02210.1 68416.m00202 phytochelatin synthetase family protein...    26   6.3  
At5g11040.1 68418.m01290 expressed protein weak similarity to hy...    26   8.3  
At2g22600.1 68415.m02679 KH domain-containing protein                  26   8.3  

>At3g56370.1 68416.m06269 leucine-rich repeat transmembrane protein
           kinase, putative leucine-rich receptor-like protein
           kinase - Malus domestica, EMBL:AF053127
          Length = 964

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -3

Query: 190 INAIMLVQLFDVP*NSCV*GSLEFPSDLRDLNSQLHDVNEE 68
           ++A+  V+  D P N  V G + F +DLRD   +L   NE+
Sbjct: 12  VSAVAPVRSLDPPLNDDVLGLIVFKADLRDPEQKLASWNED 52


>At5g23510.1 68418.m02758 expressed protein
          Length = 271

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 260 FVRHSETIIINIARPNLKLWCNGSLTLTEK 349
           FV   E   ++I R    + CN  LT+TEK
Sbjct: 166 FVHIWEAATLSIEREGYTIKCNNDLTITEK 195


>At3g02210.1 68416.m00202 phytochelatin synthetase family protein /
           COBRA cell expansion protein COBL3 similar to
           phytochelatin synthetase [Hordeum vulgare subsp.
           vulgare] GI:29570314; identified in Roudier, et al,
           Plant Phys. (2002) 130:538-548 (PMID:12376623);
           supported by cDNA: gi|26452134|dbj|AK118555.1; contains
           Pfam profile PF04833: Phytochelatin synthetase-like
           conserved region
          Length = 452

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 57  NNTISSLTSCNCEFRSLKSLGNSSDP 134
           N TI S  +C+C  R+    GN  DP
Sbjct: 239 NKTIVSCPTCSCGCRNTSQPGNCVDP 264


>At5g11040.1 68418.m01290 expressed protein weak similarity to
           hypercellular protein [Aspergillus nidulans] GI:9309269
          Length = 1186

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 103 LLNHSEIQVILIHSYFTEHQRA 168
           LL H  I +  I S++TEHQ++
Sbjct: 35  LLRHHTIALSAISSFYTEHQKS 56


>At2g22600.1 68415.m02679 KH domain-containing protein 
          Length = 632

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 96  FRSLKSLGNSSDPHTQLF 149
           + SL + GNS DPH++ F
Sbjct: 227 YESLSTDGNSEDPHSEFF 244


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,463,818
Number of Sequences: 28952
Number of extensions: 107764
Number of successful extensions: 209
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 449370720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)