Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0531
         (760 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.07 |vma4||V-type ATPase subunit E|Schizosaccharomyces p...   118   7e-28
SPBC3B9.09 |vps36||RBZ zinc finger protein Vps36|Schizosaccharom...    31   0.24 
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    28   1.3  
SPBC14C8.04 |||acetolactate synthase regulatory unit|Schizosacch...    28   1.3  
SPBC215.10 |||haloacid dehalogenase-like hydrolase|Schizosacchar...    27   2.9  
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    27   2.9  
SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ...    27   2.9  
SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyc...    26   5.1  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    26   5.1  
SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyc...    26   6.7  
SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit L2|Sc...    26   6.7  

>SPAC11E3.07 |vma4||V-type ATPase subunit E|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 227

 Score =  118 bits (285), Expect = 7e-28
 Identities = 67/216 (31%), Positives = 113/216 (52%), Gaps = 1/216 (0%)
 Frame = +3

Query: 108 LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXX 287
           LSD  VQ ++  M++FI+Q                F +EK ++V++Q   I         
Sbjct: 3   LSDEQVQAEMHKMVSFIKQEALEKAKEIHTLSEEEFQVEKAKIVREQCDAIDQTYDMKLK 62

Query: 288 XXXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQ 467
                  I  SN+LN++RL++L  ++  + ++     K+L  + +    Y++ +  LIVQ
Sbjct: 63  RASMAQKIAKSNVLNKSRLEILNSKQKVIDDIFSRVEKKLDGIEQKKDAYTKFMADLIVQ 122

Query: 468 ALFQLMEPTVTIRVRQTDKALVESLLGKAQTDYKNKIKK-DVVLKVDTENFLSPDTCGGI 644
           A+  L EP   +  RQ D  +V++ + KA    K+K    D  L  +T++FL+    GG+
Sbjct: 123 AMELLGEPVGIVYSRQRDAEIVKAAIPKATEVLKSKNGSIDYELDAETDDFLNDSVLGGV 182

Query: 645 ELVAARGRIKISNTLESRLELIAQQLLPEIRNALFG 752
            LV   G+I++ NTL +RLE++ ++ LPEIR  LFG
Sbjct: 183 VLVGLGGKIRVDNTLRARLEIVKEEALPEIRRLLFG 218


>SPBC3B9.09 |vps36||RBZ zinc finger protein
           Vps36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 467

 Score = 30.7 bits (66), Expect = 0.24
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -2

Query: 636 HRCRATKSS-RCRLSTQHPS*SYSCSLFGLFRAGTPPEPCR 517
           H  R  +SS + RLS +H   S++C +      G P  PCR
Sbjct: 77  HTSRYFRSSPKIRLSLRHVEKSWACKICTFINVGDPINPCR 117


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
 Frame = +3

Query: 516  TDKALVESLLGKAQTDYKNKIKKDVVLKVDTENF--LSPDTCGGIELVAARGRIKISNTL 689
            TD+   ++ + K + D  +  K+DV+ K+D       S    G +E    +G +K S   
Sbjct: 1861 TDQTAADNKVTKPRLDESSSSKQDVLNKIDESEIEQASSKKPGYVEKNKDKGHMKKSKKP 1920

Query: 690  ESRLELIA 713
            +S+L L A
Sbjct: 1921 KSKLALAA 1928


>SPBC14C8.04 |||acetolactate synthase regulatory
           unit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 289

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +2

Query: 17  TSFPEPVINFLALYRPFFVLVVLKISSSHGAQRCRCSE-TDQAHD 148
           T+ P+ V NFL+L RP+ VL   +  +S   +    +E T++A D
Sbjct: 233 TATPDRVDNFLSLLRPYGVLEACRTGTSAMTRAPHSNEVTEEAED 277


>SPBC215.10 |||haloacid dehalogenase-like
           hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +3

Query: 366 DHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQALFQLMEP 491
           D   N L+EA+KRLA +P D     E+ +T  +   F+++ P
Sbjct: 181 DDDTNGLEEAKKRLAGIPSD-----EVALTQALPQTFEIIPP 217


>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1052

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 9/93 (9%)
 Frame = +3

Query: 384  LDEARKRLAEVPKDTK-LYSELLVTLIVQALFQL---MEPTVTIRVR-----QTDKALVE 536
            ++EA K      KD K L   +L T+ +     +   +E T+TI V        DK   E
Sbjct: 745  VEEAEKDYQPSEKDDKSLIGGILSTVEMTQSTDVNDEIENTLTIPVEVEHSDNIDKGSEE 804

Query: 537  SLLGKAQTDYKNKIKKDVVLKVDTENFLSPDTC 635
            + LGK   D  N  + DV+  V  E   + D C
Sbjct: 805  NDLGKEAVDEANNNQNDVLESVVVEQSTTTDDC 837


>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
           subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = -3

Query: 497 DSGFHELEESLHNKCDQQL*VQF-GVLWHFSQALASFVEYITYMIFTHFQYLQTSLVQHV 321
           +S F  +EESL  K   +    F  + +  S ++   +E I Y I THF     S+++H+
Sbjct: 241 ESLFTSIEESLSLKFGWRTRRFFRSMFYERSWSVERVIECIRYSILTHFYGNALSIIEHL 300


>SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 835

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -3

Query: 692 LQSVADLDTSPGCNQLDSTTGVGRQKVLGVDFQHNILLDLIL 567
           LQ V+ +  SP    L     VG+ +V+  DF    LLDL L
Sbjct: 223 LQHVSHISISPNARYLALYESVGKVRVISSDFSKE-LLDLRL 263


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = -3

Query: 569 LVVCLGFSEQGLHQSLVGLTDADSDSGFHELEESLHNKCDQQL*VQFGV 423
           L+V     EQG    ++   D+  +SG HE+ + L N  DQQL  Q  +
Sbjct: 492 LIVACEELEQGFDLDIL---DSLRESGIHEVIQLLRNFPDQQLEKQLNI 537


>SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 347

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -3

Query: 662 PGC-NQLDSTTGVGRQKVLGVDFQHNILLDLILVVCLGF 549
           PG  N LDS  G  R+K       H + + ++L++C G+
Sbjct: 22  PGTSNVLDSKEGDTRRKYFTKTHLHRLFVFVVLLLCSGY 60


>SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit
           L2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 318

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -2

Query: 414 LQPGAC-ELRRVHYVHDLHALSVPSDELGSACSKIGSSSEV 295
           L+PG C  LR +     +HA+ V  ++    C   GSS+ +
Sbjct: 162 LKPGNCFPLRLIPIGTVIHAIGVNPNQKAKLCRSAGSSARI 202


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,828,373
Number of Sequences: 5004
Number of extensions: 54346
Number of successful extensions: 169
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)