Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0531
(760 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g11150.1 68417.m01807 vacuolar ATP synthase subunit E / V-ATP... 126 1e-29
At3g08560.1 68416.m00993 vacuolar ATP synthase subunit E, putati... 117 1e-26
At1g64200.1 68414.m07273 vacuolar ATP synthase subunit E, putati... 113 9e-26
At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly id... 31 0.83
At5g55540.1 68418.m06919 expressed protein 31 1.1
At3g58810.2 68416.m06555 zinc transporter, putative similar to z... 31 1.1
At3g58810.1 68416.m06554 zinc transporter, putative similar to z... 31 1.1
At1g77010.1 68414.m08968 pentatricopeptide (PPR) repeat-containi... 30 1.9
At5g26680.1 68418.m03171 endonuclease, putative similar to Swiss... 29 2.5
At3g03790.2 68416.m00389 ankyrin repeat family protein / regulat... 29 4.4
At3g03790.1 68416.m00388 ankyrin repeat family protein / regulat... 29 4.4
At5g55600.1 68418.m06932 agenet domain-containing protein / brom... 28 5.9
At3g07610.1 68416.m00911 transcription factor jumonji (jmjC) dom... 28 5.9
At5g05400.1 68418.m00582 disease resistance protein (CC-NBS-LRR ... 28 7.7
At1g77230.1 68414.m08995 tetratricopeptide repeat (TPR)-containi... 28 7.7
>At4g11150.1 68417.m01807 vacuolar ATP synthase subunit E / V-ATPase
E subunit / vacuolar proton pump E subunit (VATE)
identical to SP|Q39258 Vacuolar ATP synthase subunit E
(EC 3.6.3.14) (V-ATPase E subunit) (Vacuolar proton pump
E subunit) {Arabidopsis thaliana}
Length = 230
Score = 126 bits (305), Expect = 1e-29
Identities = 81/227 (35%), Positives = 119/227 (52%), Gaps = 11/227 (4%)
Frame = +3
Query: 108 LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXX 287
++D DV +QI+ M+ FI Q FNIEK +LV+ ++ KI
Sbjct: 1 MNDGDVSRQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQDYEKKEK 60
Query: 288 XXXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQ 467
I S LN +R+KVL+ ++D V + D+A K L V +D Y +LL LIVQ
Sbjct: 61 QADVRKKIDYSMQLNASRIKVLQAQDDIVNAMKDQAAKDLLNVSRDEYAYKQLLKDLIVQ 120
Query: 468 ALFQLMEPTVTIRVRQTDKALVESLLGKAQTDYKNKIKKDV-VLKVDTENFLSPDT---- 632
L +L EP+V +R R+ D LVE++L A+ +Y K K + VDT+ FL P
Sbjct: 121 CLLRLKEPSVLLRCREEDLGLVEAVLDDAKEEYAGKAKVHAPEVAVDTKIFLPPPPKSND 180
Query: 633 -----C-GGIELVAARGRIKISNTLESRLELIAQQLLPEIRNALFGR 755
C GG+ L + G+I NTL++RL++ + LP IR +LFG+
Sbjct: 181 PHGLHCSGGVVLASRDGKIVCENTLDARLDVAFRMKLPVIRKSLFGQ 227
>At3g08560.1 68416.m00993 vacuolar ATP synthase subunit E, putative
/ V-ATPase E subunit, putative / vacuolar proton pump E
subunit, putative similar to SP|Q39258 Vacuolar ATP
synthase subunit E (EC 3.6.3.14) (V-ATPase E subunit)
(Vacuolar proton pump E subunit) {Arabidopsis thaliana};
contains Pfam profile PF01991: ATP synthase (E/31 kDa)
subunit
Length = 235
Score = 117 bits (281), Expect = 1e-26
Identities = 74/228 (32%), Positives = 115/228 (50%), Gaps = 13/228 (5%)
Frame = +3
Query: 108 LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXX 287
++DADV KQI+ M+ FI Q FNIE+ +L++ + K+
Sbjct: 1 MNDADVSKQIQQMVRFIRQEAEEKANEISISAEEEFNIERLQLLESAKRKLRQDYDRKLK 60
Query: 288 XXXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQ 467
I S LN +R+K L+ ++D V + D A K L V D Y +LL +LI++
Sbjct: 61 QVDIRKRIDYSTQLNASRIKYLQAQDDVVTAMKDSAAKDLLRVSNDKNNYKKLLKSLIIE 120
Query: 468 ALFQLMEPTVTIRVRQTDKALVESLLGKAQTDYKNKIK-KDVVLKVDTENFL-------- 620
+L +L EP+V +R R+ DK +VES++ A+ Y K K + +D + FL
Sbjct: 121 SLLRLKEPSVLLRCREMDKKVVESVIEDAKRQYAEKAKVGSPKITIDEKVFLPPPPNPKL 180
Query: 621 ----SPDTCGGIELVAARGRIKISNTLESRLELIAQQLLPEIRNALFG 752
P GG+ L + G+I NTL++RL++ +Q LP+IR L G
Sbjct: 181 PDSHDPHCSGGVVLASQDGKIVCENTLDARLDVAFRQKLPQIRTRLVG 228
>At1g64200.1 68414.m07273 vacuolar ATP synthase subunit E, putative
/ V-ATPase E subunit, putative / vacuolar proton pump E
subunit, putative similar to SP|Q39258 Vacuolar ATP
synthase subunit E (EC 3.6.3.14) (V-ATPase E subunit)
(Vacuolar proton pump E subunit) {Arabidopsis thaliana};
contains Pfam profile PF01991: ATP synthase (E/31 kDa)
subunit
Length = 237
Score = 113 bits (273), Expect = 9e-26
Identities = 80/233 (34%), Positives = 115/233 (49%), Gaps = 17/233 (7%)
Frame = +3
Query: 108 LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXX 287
++DAD QI+ M+ FI Q FNIEK +LV+ ++ KI
Sbjct: 1 MNDADASIQIQQMVRFIRQEAEEKANEISISSEEEFNIEKLQLVEAEKKKIRQEYEKKEK 60
Query: 288 XXXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKL------YSELL 449
I S LN +R+KVL+ ++D V + +EA K+L +V + Y LL
Sbjct: 61 QVDVRKKIDYSMQLNASRIKVLQAQDDIVNAMKEEAAKQLLKVSQHGFFNHHHHQYKHLL 120
Query: 450 VTLIVQALFQLMEPTVTIRVRQTDKALVESLLGKAQTDYKNKIKKDV-VLKVDTENFLSP 626
LIVQ L +L EP V +R R+ D +VES+L A +Y K K + VD + FL P
Sbjct: 121 KDLIVQCLLRLKEPAVLLRCREEDLDIVESMLDDASEEYCKKAKVHAPEIIVDKDIFLPP 180
Query: 627 ----------DTCGGIELVAARGRIKISNTLESRLELIAQQLLPEIRNALFGR 755
GG+ L + G+I NTL++RLE+ + LPEIR +LFG+
Sbjct: 181 APSDDDPHALSCAGGVVLASRDGKIVCENTLDARLEVAFRNKLPEIRKSLFGK 233
>At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly
identical to auxin transport protein; BIG [Arabidopsis
thaliana] GI:21779966; contains Pfam profiles PF02207:
Putative zinc finger in N-recognin, PF00569: Zinc finger
ZZ type
Length = 5098
Score = 31.1 bits (67), Expect = 0.83
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +2
Query: 419 KGHQTVLRAAGHTYC-AGSLPAHGTHCHYPRPSNRQGSGGVPARKSPN 559
+GH+ V + +C G+ G+ C +P G+G PAR + N
Sbjct: 1613 RGHRVVYSRSSRFFCDCGAGGVRGSSCQCLKPRKYNGNGSAPARGTNN 1660
>At5g55540.1 68418.m06919 expressed protein
Length = 1380
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = -2
Query: 390 RRVHYVHDL-HALSVPSDELGSACSKIGSSSEVQPASPSFHSI 265
RR H +H+L L VP+DE A + + ++E++ PSF I
Sbjct: 1084 RRYHDLHNLAQELQVPTDENPEADNHVPVTNELEKVDPSFGGI 1126
>At3g58810.2 68416.m06555 zinc transporter, putative similar to zinc
transporter 4; ZnT4 [Mus musculus]
gi|2582990|gb|AAB82593; similar to zinc transporter ZAT
[Arabidopsis thaliana] gi|4206640|gb|AAD11757; member of
the cation diffusion facilitator (CDF) family, or cation
efflux (CE) family, PMID:11500563
Length = 393
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -2
Query: 423 PLALQPGACELRRVHYVHDLHALSVPSDELGSAC 322
P L+ G CE+ V VH+LH ++ +L AC
Sbjct: 323 PTMLEKGVCEIEEVVAVHELHIWAITVGKLLLAC 356
>At3g58810.1 68416.m06554 zinc transporter, putative similar to zinc
transporter 4; ZnT4 [Mus musculus]
gi|2582990|gb|AAB82593; similar to zinc transporter ZAT
[Arabidopsis thaliana] gi|4206640|gb|AAD11757; member of
the cation diffusion facilitator (CDF) family, or cation
efflux (CE) family, PMID:11500563
Length = 432
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -2
Query: 423 PLALQPGACELRRVHYVHDLHALSVPSDELGSAC 322
P L+ G CE+ V VH+LH ++ +L AC
Sbjct: 362 PTMLEKGVCEIEEVVAVHELHIWAITVGKLLLAC 395
>At1g77010.1 68414.m08968 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 695
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
Frame = -2
Query: 399 CELRRVHYVHDLHALSVPSDELG-----SACSKIGS 307
C + + Y H +H L +P+DE+ SAC+ I S
Sbjct: 430 CTVETLEYFHQMHKLDLPTDEVSLSSVISACASISS 465
>At5g26680.1 68418.m03171 endonuclease, putative similar to
Swiss-Prot:P39748 FLAP endonuclease-1 (Maturation factor
1) (MF1) [Homo sapiens]
Length = 453
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -3
Query: 710 DQLQARLQSVADLDTSPGCNQLDSTTGVGRQKVLGVDFQH 591
++LQ + DL GC+ DS G+G Q L + QH
Sbjct: 215 EELQLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQH 254
>At3g03790.2 68416.m00389 ankyrin repeat family protein / regulator
of chromosome condensation (RCC1) family protein similar
to hect domain and RLD 2 GB:NP_004658 [Homo sapiens];
contains Pfam PF00415: Regulator of chromosome
condensation (RCC1); contains Pfam PF00023: Ankyrin
repeat; similar to rjs (GI:3414809) [Mus musculus];
similar to HERC2 (GI:4079809) [Homo sapiens]
Length = 1081
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 50 ALYRPFFVLVVLKISSSHGAQRCRCSETDQAHDG 151
+LY P + +VLK S + A +CR E ++ +G
Sbjct: 508 SLYHPAYAPIVLKKSQTLQADKCREEENEELDEG 541
>At3g03790.1 68416.m00388 ankyrin repeat family protein / regulator
of chromosome condensation (RCC1) family protein similar
to hect domain and RLD 2 GB:NP_004658 [Homo sapiens];
contains Pfam PF00415: Regulator of chromosome
condensation (RCC1); contains Pfam PF00023: Ankyrin
repeat; similar to rjs (GI:3414809) [Mus musculus];
similar to HERC2 (GI:4079809) [Homo sapiens]
Length = 1078
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 50 ALYRPFFVLVVLKISSSHGAQRCRCSETDQAHDG 151
+LY P + +VLK S + A +CR E ++ +G
Sbjct: 505 SLYHPAYAPIVLKKSQTLQADKCREEENEELDEG 538
>At5g55600.1 68418.m06932 agenet domain-containing protein /
bromo-adjacent homology (BAH) domain-containing protein
contains Pfam profile PF01426: BAH domain and PF05641:
Agenet domain
Length = 663
Score = 28.3 bits (60), Expect = 5.9
Identities = 21/72 (29%), Positives = 31/72 (43%)
Frame = +3
Query: 489 PTVTIRVRQTDKALVESLLGKAQTDYKNKIKKDVVLKVDTENFLSPDTCGGIELVAARGR 668
P + + SLLG+ +NK KDVV+K D EN LS + + +
Sbjct: 568 PNIVEEAEPEGEKAYNSLLGE-----QNKEHKDVVVKEDDENKLSKEEDKEVGSNETKTY 622
Query: 669 IKISNTLESRLE 704
+ NT+E E
Sbjct: 623 VNHENTVEDHKE 634
>At3g07610.1 68416.m00911 transcription factor jumonji (jmjC)
domain-containing protein contains Pfam domain, PF02373:
jmjC domain
Length = 1027
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = -3
Query: 596 QHNILLDLILVVCLGFSE--QGLHQSLVGLTDADSD 495
QH L D++ V CL F E LH+ G TD D
Sbjct: 558 QHGSLKDVVAVDCLDFCEVKVNLHEFFTGYTDGRYD 593
>At5g05400.1 68418.m00582 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 874
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = +3
Query: 342 LKVLKVREDHVRNVLDEARKRLAEV 416
LK +KV+ED N+LDE ++ L+EV
Sbjct: 54 LKRIKVQEDRGLNLLDEVQQWLSEV 78
>At1g77230.1 68414.m08995 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515 TPR Domain
Length = 237
Score = 27.9 bits (59), Expect = 7.7
Identities = 24/106 (22%), Positives = 47/106 (44%)
Frame = -3
Query: 677 DLDTSPGCNQLDSTTGVGRQKVLGVDFQHNILLDLILVVCLGFSEQGLHQSLVGLTDADS 498
D+D +QLDS+ G D + L + I F+E+G +Q +G +A
Sbjct: 43 DIDRRQTTDQLDSSEVGGNHPRENFDVEAKKLAESIRAQGDKFAEEGKYQEALGKWEAAL 102
Query: 497 DSGFHELEESLHNKCDQQL*VQFGVLWHFSQALASFVEYITYMIFT 360
+ E+++ ++ Q+ ++ G W +A + EY + + T
Sbjct: 103 NL---VPEDAILHEQKAQVLLELGDAWKALKAATRYDEYSSRTLLT 145
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,302,733
Number of Sequences: 28952
Number of extensions: 308571
Number of successful extensions: 862
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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