Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0530
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces p...    32   0.069
SPBC609.04 |caf5||spermine family transmembrane transporter Caf5...    29   0.48 
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch...    25   7.9  

>SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 669

 Score = 32.3 bits (70), Expect = 0.069
 Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +3

Query: 12  ESCLLLQRTCRQDRNLAQSDVNICSRDPLLAND-SPLLTNMC 134
           E   L  +TC   R+L Q   NI   DPL+ ND  P L  +C
Sbjct: 258 EERFLFTKTCNVFRSLIQIQKNIMKEDPLIRNDYEPQLLPIC 299


>SPBC609.04 |caf5||spermine family transmembrane transporter
           Caf5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 531

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 13/57 (22%), Positives = 28/57 (49%)
 Frame = +3

Query: 357 IRNKIMPIIMMIGAVLFLGLILYFIYRYMTKXXXXXXXXXAPTPIVIMQHPASTTAP 527
           I N ++ + +++GA++ L     F+Y+ M           AP  ++++  PA+   P
Sbjct: 354 IENGLVYLGILVGALITLACYFVFLYKVMIPAFMASGGDFAPEGVLVISFPATFFIP 410


>SPBC13E7.02 |cwf24||GCN5-related N
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/53 (26%), Positives = 22/53 (41%)
 Frame = +3

Query: 27  LQRTCRQDRNLAQSDVNICSRDPLLANDSPLLTNMCQGFNYETEKTVCRGSNP 185
           LQR   Q  N A  D+N+  +  L A    + T      N +T + +    +P
Sbjct: 79  LQRESEQFENSALKDINVEYQSNLSATGESVNTTTVSAINEDTREVILGRPSP 131


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,281,476
Number of Sequences: 5004
Number of extensions: 42829
Number of successful extensions: 88
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)