Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0530
         (700 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7343| Best HMM Match : EGF (HMM E-Value=0)                          30   1.6  
SB_6080| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.8  
SB_17145| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0)                      28   8.4  
SB_581| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   8.4  

>SB_7343| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1233

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +3

Query: 153 TEKTVCRGSNPAANPNSPQYVDISDLPAGQTIMCIEPYT 269
           TE+ +C   NP AN  + +    SD  AG    CIE +T
Sbjct: 377 TERNLCEPVNPCANGGTCKRTVGSDGSAGYNCTCIEGFT 415


>SB_6080| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2101

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 18   CLLLQRTCRQDRNLAQSDVNICSRDPLLANDSPL 119
            C L Q  C++ +NL       C  +P LA+  PL
Sbjct: 1464 CTLTQTACQESKNLTVVSQGPCPPNPKLASGQPL 1497


>SB_17145| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 369

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +3

Query: 48  DRNLAQSDV-NICSRDPLLANDSPLLTNMCQGFNYETEKTVCRGSNPAANPNSP 206
           +R L+ +DV NIC++D ++ ND+       +  N E +  + +G+      ++P
Sbjct: 135 ERYLSPADVSNICAKDTVMLNDAIPSKEPIKTINPEAKPVILKGTTQEGVVSTP 188


>SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0)
          Length = 2411

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = +3

Query: 18  CLLLQRTCRQDRNLAQSDVNICSRDPLLANDSPLLTNMCQGFNYETEK 161
           C LL+  C   R + +    +C  DP+ A+D     N C    Y  EK
Sbjct: 602 CHLLREACTSGRIIRRLYRGVC--DPVCASDGRTYQNECLAKKYACEK 647


>SB_581| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 425

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = -3

Query: 272 KRVRFDAHDC--LARRKIADIYVLRRIWVSGRIAAATNCFFCFIV 144
           +RV  DA  C  L+      +Y+L+++  SGR+   T CF   +V
Sbjct: 47  RRVNLDALTCSLLSEAVNMRLYLLQKVSRSGRLYTLTACFASIVV 91


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,301,843
Number of Sequences: 59808
Number of extensions: 339896
Number of successful extensions: 792
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)