Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0530
         (700 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC110430-1|AAI10431.1|  600|Homo sapiens mediator complex subuni...    30   6.9  
AF104253-1|AAD12722.1|  600|Homo sapiens transcriptional co-acti...    30   6.9  

>BC110430-1|AAI10431.1|  600|Homo sapiens mediator complex subunit
           26 protein.
          Length = 600

 Score = 30.3 bits (65), Expect = 6.9
 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
 Frame = +3

Query: 72  VNICSRDPLLANDSPLLTNMCQGFNYETEKTVCRGSNPAANPNSPQYVDISDLPAGQ-TI 248
           V+  S DPL+ N SPL TN   G + E+  +   GS  A    S    D +D  +G+  +
Sbjct: 165 VSKASHDPLVPNSSPLPTNGISG-SPESFASSLDGSGHAGPEGSRLERDENDKHSGKIPV 223

Query: 249 MCIEPYTFS 275
             + P+T S
Sbjct: 224 NAVRPHTSS 232


>AF104253-1|AAD12722.1|  600|Homo sapiens transcriptional
           co-activator CRSP70 protein.
          Length = 600

 Score = 30.3 bits (65), Expect = 6.9
 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
 Frame = +3

Query: 72  VNICSRDPLLANDSPLLTNMCQGFNYETEKTVCRGSNPAANPNSPQYVDISDLPAGQ-TI 248
           V+  S DPL+ N SPL TN   G + E+  +   GS  A    S    D +D  +G+  +
Sbjct: 165 VSKASHDPLVPNSSPLPTNGISG-SPESFASSLDGSGHAGPEGSRLERDENDKHSGKIPV 223

Query: 249 MCIEPYTFS 275
             + P+T S
Sbjct: 224 NAVRPHTSS 232


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,107,196
Number of Sequences: 237096
Number of extensions: 1489242
Number of successful extensions: 2220
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2220
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8063224416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)