Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0530
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41510-7|AAK39381.2|   76|Caenorhabditis elegans Hypothetical pr...    34   0.085
Z19157-6|CAA79569.2| 1556|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>U41510-7|AAK39381.2|   76|Caenorhabditis elegans Hypothetical
           protein ZC449.4 protein.
          Length = 76

 Score = 34.3 bits (75), Expect = 0.085
 Identities = 11/37 (29%), Positives = 28/37 (75%)
 Frame = +3

Query: 333 KSSNSSDGIRNKIMPIIMMIGAVLFLGLILYFIYRYM 443
           K+ N +  +RN+++ +++++  +L LG+++YF++R M
Sbjct: 18  KNGNEASSLRNELLALMVLL-CLLILGVVIYFVFRSM 53


>Z19157-6|CAA79569.2| 1556|Caenorhabditis elegans Hypothetical protein
            ZC84.1 protein.
          Length = 1556

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = +3

Query: 57   LAQSDVNICSRDPLLANDSPLLTNMCQGFNYETEKTVCRGSNPAANPNSP 206
            L Q ++  C  DP    ++P  +     ++   ++  C GSNPA  P  P
Sbjct: 1017 LVQGEIAQC--DPFNPPNAPCPSEFTCQWSLSNQRYQCCGSNPAPTPQRP 1064


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,749,941
Number of Sequences: 27780
Number of extensions: 244748
Number of successful extensions: 570
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)