Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0530
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   4.9  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    22   4.9  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    22   4.9  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    22   4.9  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    22   4.9  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   4.9  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   4.9  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    21   8.5  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -1

Query: 328 TKPSLPSNQSKPKSP 284
           TKP  P  ++KP SP
Sbjct: 248 TKPPKPQTKTKPTSP 262


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 578 NSKDMYN*LNSKYMSN*LNSKYMYN 652
           N+   YN  N+ Y +N  N K  YN
Sbjct: 91  NNNYKYNYNNNNYNNNNYNKKLYYN 115


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 578 NSKDMYN*LNSKYMSN*LNSKYMYN 652
           N+   YN  N+ Y +N  N K  YN
Sbjct: 91  NNNYKYNYNNNNYNNNNYNKKLYYN 115


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 512 INNGPSSIIKDKNNIKYMYN*LNSKDMYN*LN 607
           I++  +  I + NN KY YN  N K +Y  +N
Sbjct: 82  ISSLSNKTIHNNNNYKYNYN-NNCKKLYYNIN 112


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -2

Query: 378 WALFCCGCRHYCWTICRLNLLFPVTNL 298
           W +  C    + W +C L LL  V NL
Sbjct: 79  WVIHPCSSFRFYWDLCMLLLL--VANL 103


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -2

Query: 378 WALFCCGCRHYCWTICRLNLLFPVTNL 298
           W +  C    + W +C L LL  V NL
Sbjct: 79  WVIHPCSSFRFYWDLCMLLLL--VANL 103


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -2

Query: 378 WALFCCGCRHYCWTICRLNLLFPVTNL 298
           W +  C    + W +C L LL  V NL
Sbjct: 79  WVIHPCSSFRFYWDLCMLLLL--VANL 103


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +2

Query: 542 DKNNIKYMYN*LNSKDMY 595
           + NN KY YN  N K  Y
Sbjct: 325 NNNNYKYNYNNYNKKLYY 342


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,998
Number of Sequences: 438
Number of extensions: 3148
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)