Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0528
         (759 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1...    27   2.2  
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    27   3.8  
SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces p...    26   6.7  
SPBC1347.08c |||ribonuclease H2 complex subunit|Schizosaccharomy...    25   8.9  
SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomy...    25   8.9  

>SPBC947.11c |elg1||DNA replication factor C complex subunit
           Elg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 920

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 13/49 (26%), Positives = 27/49 (55%)
 Frame = +3

Query: 414 CFIDGCFNKKSINFVLKAPNVIIASGNDLEVSFANVASTDRKAVGNDNV 560
           CFI+  F+K S+  +    +++  + N+ E+  + +AST    +  D+V
Sbjct: 768 CFINNLFSKSSLKAISSNDSIVPKALNNRELQLSALASTIGYKLDPDDV 816


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -2

Query: 701 MHH*FQYSYS*KEMSSCSLQDLKQQISQP-HIN 606
           +H   QY +  K +++ S+ +L +Q SQP HIN
Sbjct: 122 LHLNHQYQHQHKNVAANSIDNLSRQYSQPNHIN 154


>SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 752

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = -3

Query: 256 TLRHEVTNPQLNQIQTAIQAQTYKWYQLLRAYSNA 152
           TL   V +P+L+ +Q  +   + +WY +  A+S +
Sbjct: 209 TLPWRVESPELHAVQVHLGGSSLQWYVIPSAHSES 243


>SPBC1347.08c |||ribonuclease H2 complex subunit|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 293

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
 Frame = +1

Query: 217 FDSIGDSLPRVSKLLVLSRYLNKRYCSPDQIC-LNDPAMAIKT*FSDLETSSIYSIIKVK 393
           FD++G   PRVS++L     LN  +    +IC +N+P  ++   F  L+ SS+  I+  K
Sbjct: 105 FDNMGPHYPRVSEVL-SPNLLNTLH----RICKVNEPVGSLPKTF-QLDESSVVKILLRK 158

Query: 394 A 396
           A
Sbjct: 159 A 159


>SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 538

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -3

Query: 271 DLTPVTLRHEVTNPQLNQIQT 209
           DLT  TLRH  TN QL  + T
Sbjct: 380 DLTEYTLRHPETNEQLISMAT 400


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,935,582
Number of Sequences: 5004
Number of extensions: 59871
Number of successful extensions: 138
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)