Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0528
         (759 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39538| Best HMM Match : VWA (HMM E-Value=0)                         31   1.0  
SB_43428| Best HMM Match : Glyco_hydro_47 (HMM E-Value=0)              30   2.3  
SB_42757| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_28889| Best HMM Match : ANF_receptor (HMM E-Value=1.1e-34)          28   7.2  
SB_26857| Best HMM Match : Viral_NABP (HMM E-Value=2.6)                28   9.5  
SB_58520| Best HMM Match : RVT_1 (HMM E-Value=0.035)                   28   9.5  
SB_36426| Best HMM Match : Exo_endo_phos (HMM E-Value=0.016)           28   9.5  

>SB_39538| Best HMM Match : VWA (HMM E-Value=0)
          Length = 3208

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
 Frame = -2

Query: 443  FLVETT--VNETVKRQLVALTFIIEYMDDVSKSENHVFIAIAGSFKHI 306
            FLV+ +  +NET  R L+ +  I  +   VS+S+ HV I I G+F ++
Sbjct: 2551 FLVDGSDAINETHFRSLLEIVKIAYHQFPVSRSDVHVAIVIYGAFANV 2598


>SB_43428| Best HMM Match : Glyco_hydro_47 (HMM E-Value=0)
          Length = 758

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 19/59 (32%), Positives = 28/59 (47%)
 Frame = -3

Query: 604 GSQEAKMSFINIGAHTLSLPTAFLSVLATFAKDTSRSFPDAIITLGAFNTKFIDFLLKQ 428
           G+ + K +   +  H  SLP     V      +T +  P A ITLGA    + ++LLKQ
Sbjct: 584 GNDKYKQAVDKVMRHLHSLPKKNGLVPIFVNANTGQFRPGATITLGARGDSYYEYLLKQ 642


>SB_42757| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 350

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/49 (24%), Positives = 26/49 (53%)
 Frame = -3

Query: 241 VTNPQLNQIQTAIQAQTYKWYQLLRAYSNAPVFCYTM*QAGISLLERKL 95
           VT  ++NQ +   +    +WY+ L++  N+   C+ + +   S+ E +L
Sbjct: 10  VTKTEVNQWKNTSRMSVLEWYRQLQSKENSAFICFDVVEFYPSITETQL 58


>SB_28889| Best HMM Match : ANF_receptor (HMM E-Value=1.1e-34)
          Length = 933

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = -1

Query: 627 NIPTSY*LD-HRRRKCPL*ILEHIHCHYQPPF 535
           NIP    +D    R C   ++E I CH  PPF
Sbjct: 617 NIPHHRLIDLQTHRVCATEVIERIRCHLNPPF 648


>SB_26857| Best HMM Match : Viral_NABP (HMM E-Value=2.6)
          Length = 526

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 501 EVSFANVASTDRKAVGNDNVCAPIFIKD 584
           E+S+  + S DR+A   D + +P+F KD
Sbjct: 127 EISYRKLKSLDREAFTEDIMVSPLFCKD 154


>SB_58520| Best HMM Match : RVT_1 (HMM E-Value=0.035)
          Length = 556

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 501 EVSFANVASTDRKAVGNDNVCAPIFIKD 584
           E+S+  + S DR+A   D + +P+F KD
Sbjct: 96  EISYRKLKSLDREAFTEDIMVSPLFCKD 123


>SB_36426| Best HMM Match : Exo_endo_phos (HMM E-Value=0.016)
          Length = 276

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +3

Query: 465 APNVIIASGNDLEVSFANVASTDRKAVGNDNVCAPIFIKD 584
           +P  +  S    E+S+  + S DR+A   D + +P+F KD
Sbjct: 190 SPCQVKPSTEGKEISYRKLKSLDREAFMEDIMVSPLFCKD 229


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,795,017
Number of Sequences: 59808
Number of extensions: 402836
Number of successful extensions: 783
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)