Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0528
         (759 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g05850.1 68418.m00643 leucine-rich repeat family protein cont...    29   3.4  
At5g10370.1 68418.m01203 helicase domain-containing protein / IB...    29   4.4  
At4g37400.1 68417.m05295 cytochrome P450 family protein similar ...    28   5.9  
At4g01020.1 68417.m00137 helicase domain-containing protein / IB...    28   7.7  

>At5g05850.1 68418.m00643 leucine-rich repeat family protein
           contains Pfam PF00560: Leucine Rich Repeat domains;
           similar to  (SP:Q9UQ13) Leucine-rich repeat protein
           SHOC-2 (Ras-binding protein Sur-8) (SP:Q9UQ13) {Homo
           sapiens}
          Length = 506

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
 Frame = +1

Query: 124 LVTLYNKTLERCYKPAKVDTIY-MFELE*PFEF-DSIGDSLPRVSKLLVLSRYLNKRYCS 297
           ++ LYN  L+    P  +  ++ + EL+    F +++ DS+  +SKL +L+   NK    
Sbjct: 231 VLNLYNNQLQAI--PDSIAGLHNLLELDVSTNFLETLPDSIGLLSKLKILNVSCNKLTTL 288

Query: 298 PDQIC 312
           PD IC
Sbjct: 289 PDSIC 293


>At5g10370.1 68418.m01203 helicase domain-containing protein / IBR
            domain-containing protein / zinc finger protein-related
            similar to RNA-dependent ATPase/helicase Cdc28p
            [Schizosaccharomyces pombe] GI:1439562; contains Pfam
            profiles PF04408: Helicase associated domain (HA2),
            PF00271: Helicase conserved C-terminal domain, weak hit
            to PF00097: Zinc finger, C3HC4 type (RING finger),
            PF01485: IBR domain
          Length = 1775

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/62 (24%), Positives = 32/62 (51%)
 Frame = +1

Query: 109  VVIFQLVTLYNKTLERCYKPAKVDTIYMFELE*PFEFDSIGDSLPRVSKLLVLSRYLNKR 288
            VV  +L+++ ++ L  C      + +YM +   PF+   + +   R+ K++  S  + KR
Sbjct: 910  VVFGELLSIVDQYLV-CVTACDFEALYMLDPPPPFDVSQMDERRLRIKKVVGCSSTVLKR 968

Query: 289  YC 294
            +C
Sbjct: 969  FC 970


>At4g37400.1 68417.m05295 cytochrome P450 family protein similar to
           cytochrome P450 monooxygenase CYP91A2, Arabidopsis
           thaliana, D78607
          Length = 501

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 21/63 (33%), Positives = 31/63 (49%)
 Frame = -1

Query: 693 LIPI*LFLKRNELMFSSRPKTTNIPTSY*LDHRRRKCPL*ILEHIHCHYQPPFYRCLRHL 514
           ++P+ LFL   +L F+S+ K  N+P S           L IL H H   +PP +R    L
Sbjct: 7   VLPLALFLLAYKLFFTSKTKRFNLPPS-------PPYSLPILGH-HNLLKPPVHRLFHRL 58

Query: 513 QRT 505
            +T
Sbjct: 59  SKT 61


>At4g01020.1 68417.m00137 helicase domain-containing protein / IBR
            domain-containing protein / zinc finger protein-related
            similar to SP|Q14562 ATP-dependent helicase DDX8 (RNA
            helicase HRH1) (DEAH-box protein 8) {Homo sapiens};
            contains Pfam profiles PF04408: Helicase associated
            domain (HA2), PF00271: Helicase conserved C-terminal
            domain, PF00097: Zinc finger, C3HC4 type (RING finger),
            PF01485: IBR domain
          Length = 1787

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/62 (25%), Positives = 32/62 (51%)
 Frame = +1

Query: 109  VVIFQLVTLYNKTLERCYKPAKVDTIYMFELE*PFEFDSIGDSLPRVSKLLVLSRYLNKR 288
            VV  +L+++ ++ L  C      + +YM +   PF+   + +   RV K++  S  + KR
Sbjct: 907  VVFGELLSIVDQYLV-CVTAFDFEALYMLDPPPPFDASQMDERRLRVKKVVGCSSTVLKR 965

Query: 289  YC 294
            +C
Sbjct: 966  FC 967


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,631,146
Number of Sequences: 28952
Number of extensions: 287585
Number of successful extensions: 604
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)