Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0527
         (709 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|...    27   3.5  
SPAC29B12.05c |||mitochondrial S-adenosylmethionine-dependent me...    26   4.6  
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom...    26   6.1  

>SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 467

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -2

Query: 216 TSDKHSWDEQVSLLFCGCLLSIFIHL 139
           TSD   W   V L +CGCL    +HL
Sbjct: 353 TSDHSIWSWGVELRYCGCLGLGSLHL 378



 Score = 25.4 bits (53), Expect = 8.0
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = -3

Query: 668 LPHLRNETHYCFTAEIGGVVVPTRADSQEVLPPVKT-NVTTFFI 540
           +PH  + +  C++   GG      A S+ VLP V    +TTF I
Sbjct: 400 IPHQIHFSGTCYSVAAGGWQSAALAISESVLPEVNVPPITTFSI 443


>SPAC29B12.05c |||mitochondrial S-adenosylmethionine-dependent
           methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 309

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -2

Query: 255 NISTDCSAKVLIPTSDKHSWDEQV 184
           NI  DC   VLIP  +   W E+V
Sbjct: 82  NIKIDCQQGVLIPRWETEEWVERV 105


>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -2

Query: 246 TDCSAKVLIPTSDKHSWDEQVSLL 175
           TD S K++I  S +HS D + SLL
Sbjct: 320 TDPSTKIIIDDSIRHSDDPETSLL 343


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,688,848
Number of Sequences: 5004
Number of extensions: 52319
Number of successful extensions: 110
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)