Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0527
         (709 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0515 + 18238434-18238545,18238659-18238709,18238844-182388...    29   3.6  
10_06_0099 - 10677024-10677073,10677894-10677998,10678254-106783...    28   6.3  
08_01_0684 + 6009474-6009582,6009715-6009904,6011412-6011483,601...    28   6.3  
12_02_1243 + 27300978-27301682                                         28   8.4  

>09_04_0515 +
           18238434-18238545,18238659-18238709,18238844-18238897,
           18239727-18239777,18239845-18239895,18240056-18240210,
           18240550-18240663,18240873-18240938,18241478-18241561,
           18241640-18241726,18241975-18242066,18242163-18242223,
           18242475-18242531,18243129-18243220,18243394-18243584,
           18244203-18244321,18244518-18244589,18244699-18244784,
           18244866-18244962,18245488-18245622
          Length = 608

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +2

Query: 182 ETCSSQECLSDVGIKTLALQSVLILHH*VSQVSLEISIV 298
           E+     CLSD G   L+   +L+L H  S V L +S+V
Sbjct: 372 ESAGKFPCLSDSGTSHLSKHLILMLRHEESIVGLVVSVV 410


>10_06_0099 - 10677024-10677073,10677894-10677998,10678254-10678315,
            10678694-10679197,10679695-10680356,10680695-10680793,
            10680881-10681110,10681227-10681278,10681391-10681577,
            10681661-10681873,10682006-10682175,10683455-10683730,
            10684188-10684643,10685527-10685766,10687517-10687771
          Length = 1186

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -2

Query: 285  SRLT*LTQWCNISTDCSAKVLIPTSDKHSWDEQVSLLFCGCLLSI 151
            S L+ L + CN S   S  +++   DK +W E   L F  CL+ +
Sbjct: 935  SALSALLESCNSSVKSSLNMVLV--DKEAWGEDSGLAFFRCLIDL 977


>08_01_0684 +
           6009474-6009582,6009715-6009904,6011412-6011483,
           6011644-6011715,6011806-6011877,6012163-6012234,
           6012283-6012354,6012479-6012550,6012634-6012705,
           6013112-6013183,6013275-6013349,6013453-6013524,
           6013619-6013684,6013752-6013777,6014179-6014558,
           6014642-6014840,6014910-6015068,6015569-6015613,
           6015742-6015973,6016053-6016203,6016306-6016665
          Length = 879

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 550 VVTFVFTGGRTSWESARVGTTTPPISAVKQ 639
           +  + F GG TS+ ++  G+TTP +S  K+
Sbjct: 830 ITEWQFRGGNTSYVTSHSGSTTPKLSRQKE 859


>12_02_1243 + 27300978-27301682
          Length = 234

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/22 (59%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = +2

Query: 476 PALRITTVCG-LFVLPCLYKFL 538
           P   I T+CG LF  PCLYK+L
Sbjct: 32  PQEPIVTLCGHLFCWPCLYKWL 53


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,889,385
Number of Sequences: 37544
Number of extensions: 310235
Number of successful extensions: 580
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)