Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0527
         (709 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014134-1389|AAF52597.3| 2898|Drosophila melanogaster CG7466-PA...    31   1.5  
AE013599-1510|AAM68695.1|  555|Drosophila melanogaster CG8819-PC...    29   8.2  
AE013599-1507|AAO41402.1|  524|Drosophila melanogaster CG8821-PB...    29   8.2  

>AE014134-1389|AAF52597.3| 2898|Drosophila melanogaster CG7466-PA
            protein.
          Length = 2898

 Score = 31.1 bits (67), Expect = 1.5
 Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = +3

Query: 165  THKRVKKLVHPKNVCLMWESKPWRYSQYL---YCTTESVKS 278
            TH  V K+  P ++C +W +  ++   Y+   YCT ++  S
Sbjct: 1903 THSHVTKITLPDDICQLWSNGKYQCRHYMGCSYCTIQNTYS 1943


>AE013599-1510|AAM68695.1|  555|Drosophila melanogaster CG8819-PC,
           isoform C protein.
          Length = 555

 Score = 28.7 bits (61), Expect = 8.2
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 656 RNETHYCFTAEIGGVVVPTRADSQE 582
           + ET YC+    GG+VV  R++ +E
Sbjct: 363 KQETMYCYKDSYGGIVVSPRSEGEE 387


>AE013599-1507|AAO41402.1|  524|Drosophila melanogaster CG8821-PB,
           isoform B protein.
          Length = 524

 Score = 28.7 bits (61), Expect = 8.2
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 656 RNETHYCFTAEIGGVVVPTRADSQE 582
           + ET YC+    GG+VV  R++ +E
Sbjct: 332 KQETMYCYKDSYGGIVVSPRSEGEE 356


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,687,989
Number of Sequences: 53049
Number of extensions: 542681
Number of successful extensions: 1053
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1045
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3128965752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)