Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0527
         (709 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42830-2|AAC48274.1|  243|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z81069-3|CAB02989.1|  352|Caenorhabditis elegans Hypothetical pr...    28   5.7  

>U42830-2|AAC48274.1|  243|Caenorhabditis elegans Hypothetical
           protein C53B7.3 protein.
          Length = 243

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +2

Query: 110 YLSRTPAPYNKCINIDNKHPQKSKETCSSQECLSDVG 220
           Y S TP+  N   +  + +   S +TCS+ +C+S +G
Sbjct: 18  YYSSTPSYSNSYRSCSSSYECSSGQTCSNGQCMSSLG 54


>Z81069-3|CAB02989.1|  352|Caenorhabditis elegans Hypothetical
           protein F25H9.3 protein.
          Length = 352

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +3

Query: 231 WRYSQYLYCTTESVKSVLKSVLWPISFPIEYCFVHFY 341
           + YS Y  CTT++       + +PIS P   C+   Y
Sbjct: 182 FHYSTYCKCTTKNCNDPEAPIPYPISSPTVSCYTSGY 218


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,805,675
Number of Sequences: 27780
Number of extensions: 289454
Number of successful extensions: 699
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)